#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 21, 2024; 3:04 GMT

TreeBASE (cc) 1994-2008

Study reference:
Sant'anna F.H., Lebedinsky A.V., Sokolova T.G., Robb F.T., & Gonzalez J.M. 2015.
Analysis of three genomes within the thermophilic bacterial species Caldanaerobacter
subterraneus with a focus on carbon monoxide dehydrogenase evolution and hydrolase
diversity. BMC Genomics, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S18113]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=19;
        TAXLABELS
            'Caldanaerobacter subterraneus pacificus_CDSM653_0933'
            'Caldanaerobacter subterraneus tengcongensis_NP_622546.1'
            'Caldanaerobacter subterraneus yonseiensis_ERM93010.1'
            'Coprothermobacter platensis WP_018962529.1'
            'Coprothermobacter_proteolyticus_DSM_5265_YP_002246551.1'
            'Thermoanaerobacter ethanolicus WP_003866930.1'
            'Thermoanaerobacter ethanolicus WP_003870979.1'
            'Thermoanaerobacter italicus YP_003476670.1'
            'Thermoanaerobacter mathranii YP_003676616.1'
            'Thermoanaerobacter pseudethanolicus YP_001665442.1'
            'Thermoanaerobacter siderophilus WP_006570153.1'
            'Thermoanaerobacter sp. YP_001663746.1'
            'Thermoanaerobacter thermohydrosulfuricus WP_004401666.1'
            'Thermoanaerobacter wiegelii YP_004819693.1'
            Thermoanaerobacterium_saccharolyticum_ACA51661.1
            'Thermoanaerobacterium saccharolyticum YP_006392729.1'
            'Thermoanaerobacterium thermosaccharolyticum YP_003851724.1'
            'Thermoanaerobacterium thermosaccharolyticum YP_007298421.1'
            'Thermoanaerobacterium xylanolyticum YP_004471283.1'
            ;
END;

BEGIN TREES;
      TITLE HydA_phylogeny;
      LINK TAXA = Taxa;
      TREE HydA_ML = [&R] ((((Thermoanaerobacterium_saccharolyticum_ACA51661.1:1.0E-6,'Thermoanaerobacterium saccharolyticum YP_006392729.1':1.0E-6)0.8960:0.005897,'Thermoanaerobacterium xylanolyticum YP_004471283.1':0.020883)0.8950:0.019423,('Thermoanaerobacterium thermosaccharolyticum YP_007298421.1':0.003795,'Thermoanaerobacterium thermosaccharolyticum YP_003851724.1':0.007491)0.8480:0.011674)1.0000:0.13141,(('Coprothermobacter platensis WP_018962529.1':0.077503,'Coprothermobacter_proteolyticus_DSM_5265_YP_002246551.1':0.051896)1.0000:0.165331,((((('Thermoanaerobacter italicus YP_003476670.1':0.001864,'Thermoanaerobacter mathranii YP_003676616.1':1.0E-6)0.9980:0.020877,'Thermoanaerobacter pseudethanolicus YP_001665442.1':1.0E-6)0.4810:0.007527,('Thermoanaerobacter sp. YP_001663746.1':0.003747,'Thermoanaerobacter ethanolicus WP_003866930.1':0.001875)0.9550:0.007558)0.9210:0.011632,((('Thermoanaerobacter wiegelii YP_004819693.1':0.001883,'Thermoanaerobacter siderophilus WP_006570153.1':1.0E-6)0.0000:1.0E-6,'Thermoanaerobacter ethanolicus WP_003870979.1':0.001881)0.0000:1.0E-6,'Thermoanaerobacter thermohydrosulfuricus WP_004401666.1':0.005681)0.6960:0.0055)0.8270:0.029582,(('Caldanaerobacter subterraneus pacificus_CDSM653_0933':1.0E-6,'Caldanaerobacter subterraneus yonseiensis_ERM93010.1':1.0E-6)0.9130:0.003796,'Caldanaerobacter subterraneus tengcongensis_NP_622546.1':1.0E-6)0.9980:0.053928)0.9800:0.05441)0.1430:0.036011)root;
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr89894]


END;