#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 21, 2024; 8:11 GMT

TreeBASE (cc) 1994-2008

Study reference:
Sant'anna F.H., Lebedinsky A.V., Sokolova T.G., Robb F.T., & Gonzalez J.M. 2015.
Analysis of three genomes within the thermophilic bacterial species Caldanaerobacter
subterraneus with a focus on carbon monoxide dehydrogenase evolution and hydrolase
diversity. BMC Genomics, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S18113]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=13;
        TAXLABELS
            'Caldanaerobacter subterraneus pacificus_CDSM653_0109'
            'Caldanaerobacter subterraneus tengcongensis_3VTH'
            'Caldanaerobacter subterraneus tengcongensis_NP_621831.1'
            'Thermoanaerobacter WP_004399983.1'
            'Thermoanaerobacter ethanolicus WP_003868945.1'
            'Thermoanaerobacter italicus YP_003477422.1'
            'Thermoanaerobacter mathranii YP_003677318.1'
            'Thermoanaerobacter siderophilus WP_006569907.1'
            'Thermoanaerobacter wiegelii YP_004818936.1'
            'Thermoanaerobacterium saccharolyticum YP_006391306.1'
            'Thermoanaerobacterium thermosaccharolyticum YP_003850798.1'
            'Thermoanaerobacterium thermosaccharolyticum YP_007297556.1'
            'Thermoanaerobacterium xylanolyticum YP_004469849.1'
            ;
END;

BEGIN TREES;
      TITLE HypF_phylogeny;
      LINK TAXA = Taxa;
      TREE HypF_ML = [&R] ((('Thermoanaerobacterium xylanolyticum YP_004469849.1':0.021996,'Thermoanaerobacterium saccharolyticum YP_006391306.1':0.006469)0.9980:0.077105,('Thermoanaerobacterium thermosaccharolyticum YP_007297556.1':0.006554,'Thermoanaerobacterium thermosaccharolyticum YP_003850798.1':0.051163)0.9950:0.064105)1.0000:0.211489,(((('Thermoanaerobacter mathranii YP_003677318.1':1.0E-6,'Thermoanaerobacter italicus YP_003477422.1':0.011297)1.0000:0.064058,(('Thermoanaerobacter wiegelii YP_004818936.1':0.002771,'Thermoanaerobacter WP_004399983.1':0.001383)0.9100:0.004229,'Thermoanaerobacter siderophilus WP_006569907.1':0.002723)1.0000:0.037698)0.6220:0.018939,'Thermoanaerobacter ethanolicus WP_003868945.1':0.057305)0.9960:0.075843,('Caldanaerobacter subterraneus pacificus_CDSM653_0109':1.0E-6,('Caldanaerobacter subterraneus tengcongensis_NP_621831.1':1.0E-6,'Caldanaerobacter subterraneus tengcongensis_3VTH':1.0E-6)0.0000:1.0E-6)1.0000:0.105206)0.9960:0.101216)root;
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr89918]


END;