#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 17, 2024; 10:50 GMT

TreeBASE (cc) 1994-2008

Study reference:
Evans N.M., & Cartwright P. 2010. The Phylogenetic Position of Myxozoa: Exploring
Conflicting Signals in Phylogenomic and Ribosomal  Datasets. Molecular Biology
and Evolution, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S10454]

BEGIN TAXA;
        TITLE  Fig._1A_Taxa;
        DIMENSIONS NTAX=60;
        TAXLABELS
            Amoebidium_parasiticum
            Apis_mellifera
            Araneae
            Astacidea
            Batrachochytrium_dendrobatidis
            Blastocladiella_emersonii
            Bombyx_mori
            Buddenbrockia_plumatellae
            Capitella
            Capsaspora_owczarzaki
            Chalcidoidea
            Chalinidae
            Ciona_intestinalis
            Ciona_savignyi
            Crassostrea
            Cryptococcus
            Cyanea
            Danio_rerio
            Daphnia
            Dugesia
            Echinococcus
            Eutardigrada
            Euthyneura
            Fasciola_hepatica
            Gallus_gallus
            Glomus
            Haementeriinae
            Hydra
            Hydractiniidae
            Ixodes
            Lottia
            Lumbricidae
            Mammalia
            Monosiga_brevicollis
            Monosiga_ovata
            Myxinidae
            Nematostella_vectensis
            Nereididae
            Noctuoidea
            Orthopteroidea
            Pectinidae
            Penaeidae
            Petromyzon_marinus
            Plakinidae
            Proterospongia
            Rhipicephalus
            Rhizopus
            Schistosoma_japonicum
            Schistosoma_mansoni
            Schmidtea_mediterranea
            Scleractinia
            Sepiolidae
            Sphaeroforma_arctica
            Spizellomyces_punctatus
            Stolidobranchia
            Suberites_domuncula
            Tribolium_castaneum
            Ustilago
            Xenopus
            Xiphinema
            ;
END;

BEGIN TREES;
      TITLE Fig._1A_Imported_TB;
      LINK TAXA = Fig._1A_Taxa;
      TREE Fig._1A = [&R] ((Ixodes:0.027788321208703576,Rhipicephalus:0.036977531116597864):0.07907025689973711,(((Astacidea:0.0763646011892727,Penaeidae:0.10107425345562795):0.15236044492758755,(Daphnia:0.1483964092761739,(Orthopteroidea:0.05477359994399456,((Chalcidoidea:0.04851816310790853,Apis_mellifera:0.038116309903373745):0.038261606337705575,(Tribolium_castaneum:0.06066744690792319,(Bombyx_mori:0.017830005054508245,Noctuoidea:0.019927640982075827):0.08770933517166009):0.018434883795757733):0.0177199183139608):0.05806484835700492):0.019679049229803628):0.02817585595086005,((Xiphinema:0.18687645523668672,Eutardigrada:0.2624032023329664):0.04235154273869106,(((((Buddenbrockia_plumatellae:0.6231077538708311,((Hydra:0.09577730503612648,Hydractiniidae:0.07084452309004108):0.05574067925530597,Cyanea:0.1183348695212119):0.03786396109654249):0.036445557645957014,(Nematostella_vectensis:0.0925837618398252,Scleractinia:0.11371187794947775):0.04718564362827757):0.026369542134546738,(((Monosiga_ovata:0.2264817609624181,(Proterospongia:0.2652386491613205,Monosiga_brevicollis:0.17724548942112736):0.09903991038193458):0.07985259169839443,((Amoebidium_parasiticum:0.154501401309537,Sphaeroforma_arctica:0.21972670058080435):0.0966617740589043,(Capsaspora_owczarzaki:0.277928180402353,(Blastocladiella_emersonii:0.21971798264979783,((Batrachochytrium_dendrobatidis:0.16416933669180625,Spizellomyces_punctatus:0.10276324483022008):0.0656948308188494,(Glomus:0.17453119419653154,(Rhizopus:0.1628242238166873,(Ustilago:0.20038503778015596,Cryptococcus:0.20334687396317802):0.10523826407888492):0.026861435453362118):0.023564024729021103):0.025464726019764346):0.10080024870599937):0.025597579542994724):0.032957627602497694):0.055264736719604635,((Chalinidae:0.1808342497923567,Suberites_domuncula:0.1420451351324331):0.06534123806231912,Plakinidae:0.20507001343683154):0.028861092940211268):0.018631765475401275):0.04450038552988788,((Stolidobranchia:0.11850748025761201,(Ciona_savignyi:0.03438669008765658,Ciona_intestinalis:0.028070446327687244):0.0863228477780307):0.1021436273393047,((Danio_rerio:0.03735490025093626,((Gallus_gallus:0.01686194107659806,Mammalia:0.020392571919161225):0.010830567438611691,Xenopus:0.028210650764517432):0.01569334838088365):0.0340922023477874,(Myxinidae:0.1253512200384386,Petromyzon_marinus:0.05442177056335113):0.02497016072499514):0.06992186958922686):0.024343854319296778):0.025590632450339205,(((Dugesia:0.03733041035204389,Schmidtea_mediterranea:0.04579624994569576):0.28441947708397797,(Echinococcus:0.19935225776854792,(Fasciola_hepatica:0.09948507829865556,(Schistosoma_japonicum:0.028553631855457454,Schistosoma_mansoni:0.02870125448856605):0.06288057080606427):0.06943407142245331):0.10856269679646872):0.14360010577420362,((Nereididae:0.1312843814708349,((Haementeriinae:0.09663077559182305,Lumbricidae:0.09220777125494127):0.05764250611172443,Capitella:0.15029279124881176):0.0195306602766098):0.018218241813825364,(Sepiolidae:0.1734645436066244,((Euthyneura:0.13286481293704142,(Pectinidae:0.07997767399824854,Crassostrea:0.08145016936234606):0.03507257139821794):0.017193031667893464,Lottia:0.23488875230339698):0.012164350481723474):0.022470619204436767):0.017564675897511445):0.010722220970239862):0.020098323389303823):0.028192864377891702):0.05501024466381277,Araneae:0.08204012630951218):0.0;
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr9000]


END;