#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 17, 2024; 10:47 GMT

TreeBASE (cc) 1994-2008

Study reference:
Evans N.M., & Cartwright P. 2010. The Phylogenetic Position of Myxozoa: Exploring
Conflicting Signals in Phylogenomic and Ribosomal  Datasets. Molecular Biology
and Evolution, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S10454]

BEGIN TAXA;
        TITLE  Fig._1B_Taxa;
        DIMENSIONS NTAX=60;
        TAXLABELS
            Acanthoscurria_sp
            Amoebidium_parasiticum
            Apis_mellifera
            Argopecten_irradians
            Astacidea
            Batrachochytrium_dendrobatidis
            Biomphalaria_glabrata
            Blastocladiella_emersonii
            Bombyx_mori
            Buddenbrockia_plumatellae
            Capitella
            Capsaspora_owczarzaki
            Chalcidoidea
            Chalinidae
            Ciona_intestinalis
            Ciona_savignyi
            Crassostrea_gigas
            Cryptococcus
            Cyanea
            Danio_rerio
            Daphnia
            Dugesia_ryukyuensis
            Echinococcus
            Eptatretus_stouti
            Fasciola_hepatica
            Gallus_gallus
            Glomus
            Helicoverpa_assulta
            Helobdella_stagnalis
            Heteroteuthis_hawaiiensis
            Homo_sapiens
            Hydra
            Hydractinia_symbiolongicarpus
            Ixodes
            Locusta_migratoria
            Lottia_digitalis
            Lumbricidae
            Milnesium_sp
            Molgula_manhattensis
            Monosiga_brevicollis
            Monosiga_ovata
            Montastraea_franksi
            Nematostella_vectensis
            Nereis_vexillosa
            Penaeus_semisulcatus
            Petromyzon_marinus
            Plakinidae
            Proterospongia
            Rhipicephalus
            Rhizopus
            Schistosoma_japonicum
            Schistosoma_mansoni
            Schmidtea_mediterranea
            Sphaeroforma_arctica
            Spizellomyces_punctatus
            Suberites_domuncula
            Tribolium_castaneum
            Ustilago_tritici
            Xenopus
            Xiphinema_rivesi
            ;
END;

BEGIN TREES;
      TITLE Fig._1B_Imported_TB;
      LINK TAXA = Fig._1B_Taxa;
      TREE Fig._1B = [&R] ((Rhipicephalus:0.0191042669,Ixodes:0.0072065629)100:0.027904,(((Daphnia:0.0914028972,(Locusta_migratoria:0.0078905533,((Tribolium_castaneum:0.0261238116,((Bombyx_mori:3.224571E-4,Helicoverpa_assulta:0.0028022113)100:0.061989,Chalcidoidea:0.0199385273)38:2.0E-6)46:0.004063,Apis_mellifera:0.0946250787)53:0.003559)98:0.018845)90:0.014098,(Penaeus_semisulcatus:0.1164700806,Astacidea:0.0324334401)100:0.060365)92:0.022976,(Xiphinema_rivesi:0.1269208401,(Milnesium_sp:0.086641681,((((Dugesia_ryukyuensis:0.0445928004,Schmidtea_mediterranea:0.011728268)100:0.146589,(((Schistosoma_mansoni:0.0035299338,Schistosoma_japonicum:0.0069402595)100:0.031274,Fasciola_hepatica:0.0264148493)99:0.01854,Echinococcus:0.0981794007)100:0.02262)100:0.032095,((((Petromyzon_marinus:0.0269952776,Eptatretus_stouti:0.1203874907)99:0.015609,((Xenopus:0.0225351777,(Homo_sapiens:0.0109948974,Gallus_gallus:0.0122228043)100:0.012442)47:0.004679,Danio_rerio:0.0363529225)100:0.015792)99:0.055711,(((Ciona_savignyi:0.0185084686,Ciona_intestinalis:0.0161841661)100:0.031917,Molgula_manhattensis:0.0980543137)79:0.014407,(Buddenbrockia_plumatellae:0.6238935797,(((Montastraea_franksi:0.021299394,Nematostella_vectensis:0.0134998732)99:0.011715,((Hydra:0.0118566436,Hydractinia_symbiolongicarpus:0.0104493286)100:0.025398,Cyanea:0.0243775592)73:0.005441)99:0.007936,((Chalinidae:0.0905013892,(Suberites_domuncula:0.0222801673,Plakinidae:0.0348929236)100:0.021485)78:0.017965,(((Batrachochytrium_dendrobatidis:0.0868555843,Spizellomyces_punctatus:0.0130803546)66:0.014524,(Glomus:0.0734401194,((Cryptococcus:0.046183417,Ustilago_tritici:0.0795293391)98:0.01674,(Blastocladiella_emersonii:0.0994655362,Rhizopus:0.1007189751)37:0.014888)31:0.008365)45:0.008851)100:0.038532,((Capsaspora_owczarzaki:0.0653412603,(Amoebidium_parasiticum:0.011654108,Sphaeroforma_arctica:0.0337389182)100:0.028482)49:0.006875,((Proterospongia:0.0739253796,Monosiga_brevicollis:0.0182740152)100:0.039664,Monosiga_ovata:0.0390329526)97:0.014908)75:0.007778)100:0.012407)62:0.013724)81:0.052171)70:0.039186)47:0.006471)54:0.01846,(Capitella:0.1910871146,(((Helobdella_stagnalis:0.0357897041,Lumbricidae:0.0206116734)100:0.026031,(Biomphalaria_glabrata:0.0481412839,Nereis_vexillosa:0.0471310645)23:0.004063)20:0.005252,(Crassostrea_gigas:0.0377848745,Argopecten_irradians:0.0227393886)47:0.003994)43:0.00673)21:0.007703)11:0.009144)30:0.005465,(Lottia_digitalis:0.3703337541,Heteroteuthis_hawaiiensis:0.1905321757)42:0.035275)79:0.013232)44:0.0084)73:0.00676)95:0.009697,Acanthoscurria_sp:0.0264960421)100:0.0;
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr9001]


END;