#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 17, 2024; 7:10 GMT

TreeBASE (cc) 1994-2008

Study reference:
Leacock P.R., Riddell J., Wilson A., Zhang R., Chen N., & Mueller G.M. 2016. Cantharellus
chicagoensis sp. nov. is confirmed by molecular and morphological analysis
as a new yellow chanterelle in midwestern United States. Mycologia, 108(5):
765-772.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S18405]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=57;
        TAXLABELS
            Cantharellus_addaiensis_JX192976
            Cantharellus_addaiensis_JX192992
            Cantharellus_aff_roseocanus_KP639234
            Cantharellus_aff_subcyanoxanthus_JX192973
            Cantharellus_altipes_GQ914938
            Cantharellus_amethysteus_GQ914953
            Cantharellus_amethysteus_GQ914954
            Cantharellus_amethysteus_GQ914961
            Cantharellus_amethysteus_GQ914962
            Cantharellus_appalachiensis_GQ914979
            Cantharellus_avellaneus_GQ914982
            Cantharellus_cf_cibarius_GQ914940
            Cantharellus_cf_cibarius_GQ914941
            Cantharellus_cf_cibarius_GQ914947
            Cantharellus_cf_cinnabarinus_GQ914988
            Cantharellus_chicagoensis_KP639230
            Cantharellus_chicagoensis_KP639231
            Cantharellus_chicagoensis_KP639232
            Cantharellus_chicagoensis_KP639233
            Cantharellus_cibarius_DQ059050
            Cantharellus_cibarius_GQ914949
            Cantharellus_cibarius_GQ914950
            Cantharellus_cibarius_GQ914981
            Cantharellus_cibarius_KP639229
            Cantharellus_cinnabarinus_GQ914985
            Cantharellus_congolensis_JX192996
            Cantharellus_congolensis_JX193015
            Cantharellus_decolorans_GQ914968
            Cantharellus_densifolius_JX193014
            Cantharellus_ferruginascens_GQ914952
            Cantharellus_fistulosus_JX192997
            Cantharellus_flavus_JX030416
            Cantharellus_isabellinus_var_parvisporus_JX192972
            Cantharellus_lateritius_GQ914955
            Cantharellus_lateritius_GQ914958
            Cantharellus_lateritius_GQ914959
            Cantharellus_lilacinopruinatus_GQ914951
            Cantharellus_minor_JX192978
            Cantharellus_minor_JX192979
            Cantharellus_minor_cf_intensissimus_GQ914973
            Cantharellus_phasmatis_JX030417
            Cantharellus_phasmatis_JX030418
            Cantharellus_pseudominimus_JX192991
            Cantharellus_quercophilus_JX192981
            Cantharellus_roseocanus_JX030415
            Cantharellus_sebosus_JX192986
            Cantharellus_sp_GQ914967
            Cantharellus_sp_JX193012
            Cantharellus_sp_KP639228
            Cantharellus_sp_KP639235
            Cantharellus_spectaculus_JX030414
            Cantharellus_symoensii_GQ914970
            Cantharellus_tabernensis_GQ914971
            Cantharellus_tabernensis_GQ914978
            Cantharellus_tanzanicus_JX192977
            Cantharellus_tomentosus_JX192995
            Craterellus_tubaeformis_GQ914989
            ;
END;

BEGIN TREES;
      TITLE Leacock_Cantharellus_ef1a;
      LINK TAXA = Taxa;
      TREE ef1a = [&R] (Craterellus_tubaeformis_GQ914989:0.1437138245685055,((Cantharellus_cibarius_GQ914981:7.73457854738289E-4,Cantharellus_sebosus_JX192986:0.002990960203761424)100:0.06236574970271153,(((Cantharellus_tanzanicus_JX192977:0.04991550795713776,(Cantharellus_sp_JX193012:0.03249775614876954,Cantharellus_densifolius_JX193014:0.03151687000556327)96:0.01485386619919694)84:0.008552979453280795,((Cantharellus_tomentosus_JX192995:0.03470828262880899,Cantharellus_isabellinus_var_parvisporus_JX192972:0.03012710299156295)96:0.014995184269530943,(Cantharellus_addaiensis_JX192992:0.008886440100469696,Cantharellus_addaiensis_JX192976:2.3659780877167E-6)100:0.055974680745065626)98:0.024469325811487443)98:0.038771676772414734,(((Cantharellus_fistulosus_JX192997:0.12278431935742186,((Cantharellus_aff_subcyanoxanthus_JX192973:0.023340043099274815,Cantharellus_symoensii_GQ914970:0.1648218041865279)62:0.006528694003999751,((Cantharellus_cf_cinnabarinus_GQ914988:0.026972123321395793,Cantharellus_cinnabarinus_GQ914985:0.03593706778609776)93:0.012339789130207548,(Cantharellus_sp_GQ914967:0.002987771332353745,Cantharellus_decolorans_GQ914968:0.006173981674937117)100:0.07774326438696859)54:0.009074512964990959)16:0.003924780093399054)22:0.0027399663000769146,((Cantharellus_avellaneus_GQ914982:0.0037364766062753974,(Cantharellus_congolensis_JX193015:2.3659780877167E-6,Cantharellus_congolensis_JX192996:2.3659780877167E-6)97:2.3659780877167E-6)100:0.08294984876860453,((Cantharellus_pseudominimus_JX192991:0.009449426479619548,(Cantharellus_minor_JX192979:2.3659780877167E-6,Cantharellus_minor_JX192978:0.0013258611965556236)100:0.05326572632911707)100:0.031022566727221264,(Cantharellus_appalachiensis_GQ914979:0.00560658640077435,(Cantharellus_tabernensis_GQ914978:2.3659780877167E-6,(Cantharellus_minor_cf_intensissimus_GQ914973:0.003664570134972236,Cantharellus_tabernensis_GQ914971:0.0012072008723785544)41:2.3659780877167E-6)52:0.0025272666114955172)100:0.052551173458620745)99:0.028310840013045704)60:0.01780744439221556)88:0.01898032110487465,((Cantharellus_lateritius_GQ914958:0.0036279230837146068,(Cantharellus_lateritius_GQ914955:0.002755238206775185,Cantharellus_lateritius_GQ914959:2.3659780877167E-6)51:2.3659780877167E-6)100:0.03255918244556267,((Cantharellus_amethysteus_GQ914962:0.0013654350005253362,Cantharellus_amethysteus_GQ914961:0.003929137317658487)100:0.04577506662253187,(((Cantharellus_ferruginascens_GQ914952:2.3659780877167E-6,Cantharellus_lilacinopruinatus_GQ914951:0.0012278266953109837)99:0.012580061800364696,(Cantharellus_spectaculus_JX030414:0.03287173349676751,(Cantharellus_amethysteus_GQ914954:0.0021335742672115485,Cantharellus_amethysteus_GQ914953:0.001088921174508407)100:0.013446911986240241)58:0.00416609884125472)11:2.3659780877167E-6,((Cantharellus_chicagoensis_KP639233:2.3659780877167E-6,(Cantharellus_chicagoensis_KP639231:2.3659780877167E-6,(Cantharellus_chicagoensis_KP639230:2.3659780877167E-6,Cantharellus_chicagoensis_KP639232:2.3659780877167E-6)35:2.3659780877167E-6)99:2.3659780877167E-6)100:0.020131029313211184,((Cantharellus_quercophilus_JX192981:0.025392387614269856,(Cantharellus_altipes_GQ914938:2.3659780877167E-6,(Cantharellus_cf_cibarius_GQ914941:0.0011079363857712436,Cantharellus_cf_cibarius_GQ914940:2.3659780877167E-6)63:2.3659780877167E-6)100:0.013929968507872008)76:0.0010255211822727112,((Cantharellus_sp_KP639235:0.002270316918688678,(Cantharellus_cf_cibarius_GQ914947:0.004988681968434304,(Cantharellus_flavus_JX030416:2.3659780877167E-6,(Cantharellus_phasmatis_JX030418:2.3659780877167E-6,Cantharellus_phasmatis_JX030417:0.001084780171748217)90:0.0021647767248936522)81:0.0010980757948220747)73:0.0010064184588205217)100:0.012460230798041417,(Cantharellus_roseocanus_JX030415:0.002143981331675395,((Cantharellus_cibarius_GQ914950:0.00323603229576427,Cantharellus_cibarius_GQ914949:0.005085616412497243)45:2.3659780877167E-6,(Cantharellus_sp_KP639228:2.3659780877167E-6,(Cantharellus_aff_roseocanus_KP639234:2.3659780877167E-6,(Cantharellus_cibarius_KP639229:2.3659780877167E-6,Cantharellus_cibarius_DQ059050:0.0015557625275700654)64:0.002112079589828042)32:2.3659780877167E-6)64:0.0010562524452293533)67:0.001041156157074409)100:0.009805458759719294)99:0.01576252788560932)45:0.0010071314421548415)39:0.001083828853779279)73:0.004133065682856189)46:0.0012905715320144285)67:0.009838660631232182)53:0.010734423373062242)57:0.022662136370201112):0.1437138245685055);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr91381]


END;