#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 09, 2024; 11:10 GMT TreeBASE (cc) 1994-2008 Study reference: Kingsley E.P., Kozak K.M., Pfeiffer S., Yang D., & Hoekstra H.E. 2015. The ultimate and proximate mechanisms driving the evolution of long tails in forest deer mice. Evolution, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S18261] BEGIN TAXA; TITLE Peromyscus_maniculatus; DIMENSIONS NTAX=80; TAXLABELS Peromyscus_keeni_AK_01 Peromyscus_keeni_AK_02 Peromyscus_leucopus_ARY_3 Peromyscus_leucopus_EPK27 Peromyscus_leucopus_RM2 Peromyscus_leucopus_RM3 Peromyscus_maniculatus_abietorum_ME_01 Peromyscus_maniculatus_bairdii_NE_01 Peromyscus_maniculatus_bairdii_NE_02 Peromyscus_maniculatus_blandus_CH_01 Peromyscus_maniculatus_blandus_CH_02 Peromyscus_maniculatus_blandus_NM_01 Peromyscus_maniculatus_blandus_NM_02 Peromyscus_maniculatus_blandus_NM_03 Peromyscus_maniculatus_blandus_NM_04 Peromyscus_maniculatus_blandus_NM_05 Peromyscus_maniculatus_blandus_NM_06 Peromyscus_maniculatus_borealis_AB_01 Peromyscus_maniculatus_borealis_AB_02 Peromyscus_maniculatus_borealis_AB_03 Peromyscus_maniculatus_borealis_AB_04 Peromyscus_maniculatus_fulvus_TL_01 Peromyscus_maniculatus_fulvus_VZ_01 Peromyscus_maniculatus_gambelii_CA_01 Peromyscus_maniculatus_gambelii_CA_02 Peromyscus_maniculatus_gambelii_CA_03 Peromyscus_maniculatus_gambelii_CA_04 Peromyscus_maniculatus_gambelii_CA_05 Peromyscus_maniculatus_gambelii_CA_06 Peromyscus_maniculatus_gambelii_CA_07 Peromyscus_maniculatus_gambelii_CA_08 Peromyscus_maniculatus_gambelii_CA_09 Peromyscus_maniculatus_gambelii_OR_01 Peromyscus_maniculatus_gambelii_OR_02 Peromyscus_maniculatus_gambelii_OR_03 Peromyscus_maniculatus_gambelii_OR_04 Peromyscus_maniculatus_gambelii_OR_05 Peromyscus_maniculatus_gambelii_OR_06 Peromyscus_maniculatus_gambelii_OR_07 Peromyscus_maniculatus_gambelii_OR_08 Peromyscus_maniculatus_gambelii_OR_09 Peromyscus_maniculatus_gracilis_MI_01 Peromyscus_maniculatus_gracilis_MI_02 Peromyscus_maniculatus_gracilis_MI_03 Peromyscus_maniculatus_gracilis_MI_04 Peromyscus_maniculatus_gracilis_MI_05 Peromyscus_maniculatus_gracilis_MI_06 Peromyscus_maniculatus_gracilis_MI_07 Peromyscus_maniculatus_gracilis_ON_01 Peromyscus_maniculatus_gracilis_ON_02 Peromyscus_maniculatus_gracilis_ON_03 Peromyscus_maniculatus_nebrascensis_UT_01 Peromyscus_maniculatus_nebrascensis_UT_02 Peromyscus_maniculatus_nebrascensis_WY_01 Peromyscus_maniculatus_nubiterrae_PA_01 Peromyscus_maniculatus_nubiterrae_PA_02 Peromyscus_maniculatus_nubiterrae_PA_03 Peromyscus_maniculatus_nubiterrae_PA_04 Peromyscus_maniculatus_nubiterrae_PA_05 Peromyscus_maniculatus_nubiterrae_PA_06 Peromyscus_maniculatus_nubiterrae_PA_07 Peromyscus_maniculatus_nubiterrae_VA_01 Peromyscus_maniculatus_rubidus_CA_01 Peromyscus_maniculatus_rubidus_CA_02 Peromyscus_maniculatus_rubidus_OR_01 Peromyscus_maniculatus_rubidus_OR_02 Peromyscus_maniculatus_rubidus_OR_03 Peromyscus_maniculatus_rubidus_OR_04 Peromyscus_maniculatus_rubidus_OR_05 Peromyscus_maniculatus_rubidus_OR_06 Peromyscus_maniculatus_rubidus_OR_07 Peromyscus_maniculatus_rubidus_OR_08 Peromyscus_maniculatus_rubidus_OR_09 Peromyscus_maniculatus_rufinus_NM_01 Peromyscus_maniculatus_rufinus_NM_02 Peromyscus_maniculatus_sonoriensis_AZ_01 Peromyscus_maniculatus_sonoriensis_AZ_02 Peromyscus_maniculatus_sonoriensis_AZ_03 Peromyscus_maniculatus_sonoriensis_CA_01 Peromyscus_maniculatus_sonoriensis_CA_02 ; END; BEGIN TREES; TITLE Peromyscus_maniculatus_SNP_capture; LINK TAXA = Peromyscus_maniculatus; TREE SmartPCA = [&R] (Peromyscus_maniculatus_gambelii_CA_01,Peromyscus_maniculatus_borealis_AB_03,Peromyscus_maniculatus_nebrascensis_WY_01,Peromyscus_maniculatus_borealis_AB_01,Peromyscus_maniculatus_bairdii_NE_02,Peromyscus_maniculatus_bairdii_NE_01,Peromyscus_maniculatus_blandus_NM_03,Peromyscus_keeni_AK_01,Peromyscus_keeni_AK_02,Peromyscus_maniculatus_gambelii_CA_05,Peromyscus_maniculatus_gambelii_CA_06,Peromyscus_maniculatus_rufinus_NM_01,Peromyscus_maniculatus_sonoriensis_AZ_03,Peromyscus_maniculatus_sonoriensis_AZ_01,Peromyscus_maniculatus_rufinus_NM_02,Peromyscus_maniculatus_sonoriensis_AZ_02,Peromyscus_maniculatus_blandus_CH_02,Peromyscus_maniculatus_borealis_AB_04,Peromyscus_maniculatus_gambelii_OR_07,Peromyscus_maniculatus_sonoriensis_CA_02,Peromyscus_maniculatus_rubidus_OR_08,Peromyscus_maniculatus_rubidus_OR_02,Peromyscus_maniculatus_rubidus_OR_07,Peromyscus_maniculatus_rubidus_OR_06,Peromyscus_maniculatus_gambelii_CA_09,Peromyscus_maniculatus_gambelii_CA_03,Peromyscus_maniculatus_rubidus_OR_03,Peromyscus_maniculatus_rubidus_OR_01,Peromyscus_maniculatus_rubidus_OR_04,Peromyscus_maniculatus_gambelii_OR_08,Peromyscus_maniculatus_gambelii_OR_04,Peromyscus_maniculatus_rubidus_OR_09,Peromyscus_maniculatus_gambelii_OR_05,Peromyscus_maniculatus_gambelii_CA_04,Peromyscus_maniculatus_rubidus_OR_05,Peromyscus_maniculatus_sonoriensis_CA_01,Peromyscus_maniculatus_rubidus_CA_02,Peromyscus_maniculatus_gambelii_OR_06,Peromyscus_maniculatus_gambelii_OR_02,Peromyscus_maniculatus_gambelii_OR_01,Peromyscus_maniculatus_gambelii_OR_03,Peromyscus_maniculatus_gambelii_CA_08,Peromyscus_maniculatus_nebrascensis_UT_01,Peromyscus_maniculatus_gambelii_CA_07,Peromyscus_maniculatus_gambelii_OR_09,Peromyscus_maniculatus_nebrascensis_UT_02,Peromyscus_maniculatus_gambelii_CA_02,Peromyscus_maniculatus_rubidus_CA_01,((Peromyscus_maniculatus_blandus_NM_06,(Peromyscus_maniculatus_blandus_NM_05,(Peromyscus_maniculatus_blandus_NM_04,(Peromyscus_maniculatus_blandus_NM_02,(Peromyscus_maniculatus_borealis_AB_02,(Peromyscus_maniculatus_blandus_CH_01,(Peromyscus_maniculatus_blandus_NM_01,(Peromyscus_maniculatus_fulvus_TL_01,Peromyscus_maniculatus_fulvus_VZ_01)0.70)0.68)0.34)0.32)0.33)0.44)0.36)0.70,(Peromyscus_maniculatus_gracilis_ON_03,(Peromyscus_maniculatus_nubiterrae_VA_01,(Peromyscus_maniculatus_gracilis_MI_01,(Peromyscus_maniculatus_gracilis_MI_03,Peromyscus_maniculatus_gracilis_ON_01,Peromyscus_maniculatus_gracilis_MI_06,(Peromyscus_maniculatus_gracilis_MI_02,Peromyscus_maniculatus_nubiterrae_PA_06,Peromyscus_maniculatus_gracilis_MI_07,Peromyscus_maniculatus_gracilis_ON_02,Peromyscus_maniculatus_nubiterrae_PA_05,Peromyscus_maniculatus_gracilis_MI_04,Peromyscus_maniculatus_nubiterrae_PA_02,Peromyscus_maniculatus_nubiterrae_PA_03,Peromyscus_maniculatus_nubiterrae_PA_04,Peromyscus_maniculatus_abietorum_ME_01,Peromyscus_maniculatus_nubiterrae_PA_07,Peromyscus_maniculatus_nubiterrae_PA_01,Peromyscus_maniculatus_gracilis_MI_05)0.33)0.47)0.39)0.65)0.85)0.50); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr91826] END;