#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 18, 2024; 12:49 GMT

TreeBASE (cc) 1994-2008

Study reference:
Cui Y., Yan C., Li J., Sun T., Yue B., Zhang X., & Li J. 2016. Identification of
CR1 Retroposons in Arborophila rufipectus and their application to Phasianidae Phylogeny.
Molecular Ecology Resources, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S18808]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=13;
        TAXLABELS
            Anas_platyrhynchos
            Arborophila_ardens
            Arborophila_brunneopectus
            Arborophila_rufipectus
            Chrysolophus_amherstiae
            Gallus_gallus
            Lophophorus_lhuysii
            Meleagris_gallopavo
            Phasianus_colchicus
            Pucrasia_macrolopha
            Syrmaticus_reevesii
            Tetraophasis_szechenyii
            Tragopan_temminckii
            ;
END;

BEGIN TREES;
      TITLE Phasianidae_combined_12_mitochondrial_protein_coding_genes_using_ML_analysis;
      LINK TAXA = Taxa;
      TREE Fig_2 = [&R] (Anas_platyrhynchos:0.927335475,((Arborophila_rufipectus:0.22389239,(Arborophila_ardens:0.0616158,Arborophila_brunneopectus:0.06216855)100:0.0903761)100:0.32100463,(Gallus_gallus:0.33986441,((Tragopan_temminckii:0.29875077,(Lophophorus_lhuysii:0.18064075,Tetraophasis_szechenyii:0.20654481)100:0.07241031)74:0.00885663,(Meleagris_gallopavo:0.40788823,(Pucrasia_macrolopha:0.27032139,(Syrmaticus_reevesii:0.23525822,(Phasianus_colchicus:0.17561919,Chrysolophus_amherstiae:0.13165659)100:0.03569416)100:0.12325139)87:0.02239805)70:0.01215408):0.07867614)99:0.14046176)100:0.927335475);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr93559]


END;