#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 18, 2024; 20:33 GMT

TreeBASE (cc) 1994-2008

Study reference:
Suzuki M., Segawa T., Mori H., Akiyoshi A., Ootsuki R., Kurihara A., Kitayama T.,
Abe T., Kogame K., & Nozaki H. 2016. Next-generation sequencing of an 88-year-old
specimen of the poorly known species Liagora japonica (Nemaliales, Rhodophyta)
supports the recognition of Otohimella gen. nov. PLOS One, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S18829]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=49;
        TAXLABELS
            Actinotrichia_fragilis_AY570363
            Akalaphycus_liagoroides_DQ873279
            Akalaphycus_setchelliae_AY523825_Type
            Akalaphycus_setchelliae_AY523826
            Akalaphycus_setchelliae_AY523827
            Cumagloia_andersonii_AF419137_Type
            Dotyophycus_abbottiae_AY570370
            Galaxaura_rugosa_AY570368
            Ganonema_farinosum_AY424880_Type
            Ganonema_papenfussii_AY424877
            Ganonema_pinnatum_AY424878
            Ganonema_yoshizakii_AY424876
            Helminthocladia_australis_AY570372
            Helminthocladia_hudsonii_FR715030
            Helminthocladia_hudsonii_FR715031
            Helminthora_australis_AY570373
            Helminthora_divaricata_FR715032_Type
            Hommersandiophycus_borowitzkae_AY570371
            Hommersandiophycus_samaensis_AY424879
            Izziella_orientalis_AY523829_Type
            Liagora_albicans_AY424872
            Liagora_albicans_AY523820
            Liagora_australasica_DQ873276
            Liagora_ceranoides_DQ873277
            Liagora_ceranoides_DQ873278
            Liagora_donaldiana_AY424875
            Liagora_harveyana_DQ873275
            Liagora_japonica_LC066525_LC066526
            Liagora_japonica_LC066527_LC066528
            Liagora_julieae_AY424873
            Liagora_mannarensis_AY570374
            Liagora_viscida_DQ873274_Type
            Macrocarpus_perennis_AY424870_Type
            Macrocarpus_perennis_AY523822_Type
            Nemalion_helminthoides_AY570376
            Nemalion_lubricum_FR715028_Type
            Nemalion_multifidum_FR715027
            Neoizziella_divaricata_AY424871
            Neoizziella_divaricata_AY523821
            Patenocarpus_paraphysiferus_AY570377
            Scinaia_confusa_AY570380
            Stenopeltis_gracilis_AY523823_Type
            Stenopeltis_gracilis_AY523824_Type
            Titanophycus_validus_AY424874_Type
            Titanophycus_validus_AY570375_Type
            Trichogloea_lubrica_AY523828
            Tricleocarpa_cylindrica_AY570369
            Yamadaella_caenomyce_AY424881
            Yamadaella_caenomyce_AY570378
            ;
END;

BEGIN TREES;
      TITLE Liagora_japonica_28S_rRNA_gene;
      LINK TAXA = Taxa;
      TREE Imported_tree_1 = [&R] ((Tricleocarpa_cylindrica_AY570369,(Actinotrichia_fragilis_AY570363,Galaxaura_rugosa_AY570368)),(Scinaia_confusa_AY570380,((Nemalion_multifidum_FR715027,(Nemalion_helminthoides_AY570376,Nemalion_lubricum_FR715028_Type)),(Cumagloia_andersonii_AF419137_Type,(Helminthocladia_australis_AY570372,(Helminthocladia_hudsonii_FR715030,Helminthocladia_hudsonii_FR715031)),((Yamadaella_caenomyce_AY424881,Yamadaella_caenomyce_AY570378),(Dotyophycus_abbottiae_AY570370,(Liagora_japonica_LC066525_LC066526,Liagora_japonica_LC066527_LC066528,(Liagora_donaldiana_AY424875,Trichogloea_lubrica_AY523828,(Ganonema_farinosum_AY424880_Type,Hommersandiophycus_samaensis_AY424879,((Ganonema_papenfussii_AY424877,Ganonema_pinnatum_AY424878),(Ganonema_yoshizakii_AY424876,Hommersandiophycus_borowitzkae_AY570371))),(Macrocarpus_perennis_AY424870_Type,Macrocarpus_perennis_AY523822_Type)),((Izziella_orientalis_AY523829_Type,(Liagora_harveyana_DQ873275,Liagora_mannarensis_AY570374,(Liagora_australasica_DQ873276,(Liagora_viscida_DQ873274_Type,(Helminthora_australis_AY570373,Helminthora_divaricata_FR715032_Type)))),(Liagora_julieae_AY424873,(Liagora_albicans_AY523820,Liagora_albicans_AY424872)),(Liagora_ceranoides_DQ873277,Liagora_ceranoides_DQ873278)),(Stenopeltis_gracilis_AY523823_Type,Stenopeltis_gracilis_AY523824_Type)),(Neoizziella_divaricata_AY424871,Neoizziella_divaricata_AY523821),((Titanophycus_validus_AY424874_Type,Titanophycus_validus_AY570375_Type),(Patenocarpus_paraphysiferus_AY570377,Akalaphycus_liagoroides_DQ873279,(Akalaphycus_setchelliae_AY523825_Type,(Akalaphycus_setchelliae_AY523826,Akalaphycus_setchelliae_AY523827)))))))))));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr93606]


END;