#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 18, 2024; 23:22 GMT

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Study reference:
Suzuki M., Segawa T., Mori H., Akiyoshi A., Ootsuki R., Kurihara A., Kitayama T.,
Abe T., Kogame K., & Nozaki H. 2016. Next-generation sequencing of an 88-year-old
specimen of the poorly known species Liagora japonica (Nemaliales, Rhodophyta)
supports the recognition of Otohimella gen. nov. PLOS One, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S18829]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=45;
        TAXLABELS
            Actinotrichia_fragilis_Philippines
            Akalaphycus_setchelliae_KendingTaiwan
            Cumagloia_andersonii_OregonUSA
            Dermonema_virens_KeelungTaiwan
            Dermonema_virens_PingtungTaiwan
            Galaxaura_rugosa_Taiwan
            Ganonema_farinosum_Philippines
            Ganonema_farinosum_Taiwan
            Helminthocladia_australis_Taiwan
            Helminthocladia_calvadosii_Spain
            Helminthora_divaricata_Ireland
            Helminthora_lindaueri_NewZealand
            Hommersandiophycus_borowitzkae_Philippines
            Hommersandiophycus_borowitzkae_Taiwan
            Hommersandiophycus_clavatus_Taiwan
            Hommersandiophycus_samaensis_Taiwan
            Izziella_formosana_Taiwan
            Izziella_hommersandii_Taiwan
            Izziella_kuroshioensis_Taiwan
            Liagora_albicans_Taiwan
            Liagora_boergesenii_Taiwan
            Liagora_ceranoides_Australia
            Liagora_ceranoides_FloridaUSA
            Liagora_harveyana_NewZealand
            Liagora_japonica_LC093498
            Liagora_japonica_OJ1
            Liagora_viscida_Spain
            Liagoropsis_maxima_TaitungTaiwan
            Macrocarpus_perennis_Australia
            Macrocarpus_perennis_Taiwan
            Nemalion_multifidum_GalwayIreland
            Nemalion_multifidum_Ireland
            Nemalion_vermiculare_IwateJapan
            Neoizziella_asiatica_Australia
            Neoizziella_asiatica_Taiwan
            Neoizziella_divaricata_Taiwan
            Scinaia_chinensis_Taiwan
            Scinaia_complanata_Spain
            Stenopeltis_gracilis_Taiwan
            Titanophycus_setchellii_Taiwan
            Titanophycus_validus_Bahamas
            Trichogloeopsis_pedicellata_Bahamas
            Tricleocarpa_cylindrica_Guadeloupe
            Yamadaella_caenomyce_Japan
            Yamadaella_caenomyce_Taiwan
            ;
END;

BEGIN TREES;
      TITLE Liagora_japonica_Combined_psaA_and_rbcL;
      LINK TAXA = Taxa;
      TREE Imported_tree_1 = [&R] ((((Liagoropsis_maxima_TaitungTaiwan,(Tricleocarpa_cylindrica_Guadeloupe,(Actinotrichia_fragilis_Philippines,Galaxaura_rugosa_Taiwan))),(Nemalion_vermiculare_IwateJapan,(Nemalion_multifidum_Ireland,Nemalion_multifidum_GalwayIreland))),(Scinaia_chinensis_Taiwan,Scinaia_complanata_Spain)),((Yamadaella_caenomyce_Japan,Yamadaella_caenomyce_Taiwan),(((Cumagloia_andersonii_OregonUSA,(Helminthocladia_australis_Taiwan,Helminthocladia_calvadosii_Spain)),(Dermonema_virens_PingtungTaiwan,Dermonema_virens_KeelungTaiwan)),(((Helminthora_divaricata_Ireland,Helminthora_lindaueri_NewZealand),(Trichogloeopsis_pedicellata_Bahamas,(Hommersandiophycus_clavatus_Taiwan,(Hommersandiophycus_samaensis_Taiwan,(Hommersandiophycus_borowitzkae_Taiwan,Hommersandiophycus_borowitzkae_Philippines))))),((Ganonema_farinosum_Taiwan,Ganonema_farinosum_Philippines),((Stenopeltis_gracilis_Taiwan,(Izziella_formosana_Taiwan,Izziella_kuroshioensis_Taiwan,(Izziella_hommersandii_Taiwan,((Liagora_albicans_Taiwan,(Liagora_ceranoides_FloridaUSA,Liagora_ceranoides_Australia)),(Liagora_boergesenii_Taiwan,(Liagora_harveyana_NewZealand,Liagora_viscida_Spain)))))),((Akalaphycus_setchelliae_KendingTaiwan,(Titanophycus_setchellii_Taiwan,Titanophycus_validus_Bahamas)),((Macrocarpus_perennis_Australia,Macrocarpus_perennis_Taiwan),((Neoizziella_divaricata_Taiwan,(Neoizziella_asiatica_Australia,Neoizziella_asiatica_Taiwan)),(Liagora_japonica_LC093498,Liagora_japonica_OJ1))))))))));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr93608]


END;