#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 25, 2024; 8:46 GMT TreeBASE (cc) 1994-2008 Study reference: Suzuki M., Segawa T., Mori H., Akiyoshi A., Ootsuki R., Kurihara A., Kitayama T., Abe T., Kogame K., & Nozaki H. 2016. Next-generation sequencing of an 88-year-old specimen of the poorly known species Liagora japonica (Nemaliales, Rhodophyta) supports the recognition of Otohimella gen. nov. PLOS One, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S18829] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=72; TAXLABELS Actinotrichia_fragilis_KC609399 Akalaphycus_liagoroides_KC134343 Akalaphycus_setchelliae_GU357697 Akalaphycus_setchelliae_GU357698 Akalaphycus_setchelliae_KP238491 Cumagloia_andersonii_JX878365 Dermonema_virens_HQ901787 Dermonema_virens_KF667091 Galaxaura_rugosa_AB258448 Ganonema_farinosum_GU357699 Ganonema_farinosum_GU357700 Ganonema_farinosum_KF667109 Ganonema_farinosum_KF667111 Gloiocallis_dendroidea_KF667101 Helminthocladia_australis_GU357701 Helminthocladia_calvadosii_KP238492 Helminthora_divaricata_KP238494 Helminthora_lindaueri_KP238496 Hommersandiophycus_borowitzkae_KF667093 Hommersandiophycus_clavatus_KF667098 Hommersandiophycus_samaensis_KF667102 Izziella_formosana_GU357688 Izziella_hommersandii_GU357690 Izziella_kuroshioensis_GU357684 Izziella_kuroshioensis_GU357685 Liagora_albicans_HQ901786 Liagora_boergesenii_GU357679 Liagora_ceranoides_GU357681 Liagora_ceranoides_GU357682 Liagora_ceranoides_JX878367 Liagora_harveyana_HM572263 Liagora_japonica_LC066217 Liagora_japonica_LC066218 Liagora_japonica_LC066219 Liagora_viscida_GU357678 Liagora_viscida_HM572262 Liagoropsis_maxima_KP266617 Macrocarpus_perennis_HQ901783 Macrocarpus_perennis_HQ901785 Macrocarpus_perennis_JX878368 Macrocarpus_perennis_JX878369 Nemalion_multifidum_KC134329 Nemalion_multifidum_KP238498 Nemalion_multifidum_KP238499 Nemalion_vermiculare_KP238497 Nemalion_vermiculare_LC066221 Neoizziella_asiatica_HQ901777 Neoizziella_asiatica_HQ901778 Neoizziella_asiatica_HQ901780 Neoizziella_asiatica_HQ901789 Neoizziella_asiatica_JX878370 Neoizziella_asiatica_JX878371 Neoizziella_divaricata_HQ901781 Scinaia_chinensis_KP238505 Scinaia_complanata_KP238506 Scinaia_confusa_KC134333 Scinaia_hormoides_KP238507 Stenopeltis_gracilis_GU357695 Titanophycus_setchellii_GU357694 Titanophycus_setchellii_JX878372 Titanophycus_setchellii_JX878373 Titanophycus_validus_GU357692 Titanophycus_validus_GU357693 Trichogloeopsis_mucosissima_KF667107 Trichogloeopsis_pedicellata_KF667108 Tricleocarpa_cylindrica_KC768145 Yamadaella_caenomyce_KP238501 Yamadaella_caenomyce_KP238502 Yoshizakia_indopacifica_JX878374 Yoshizakia_indopacifica_JX878375 Yoshizakia_indopacifica_JX878377 Yoshizakia_indopacifica_JX878378 ; END; BEGIN TREES; TITLE Liagora_japonica_rbcL; LINK TAXA = Taxa; TREE Imported_tree_1 = [&R] (Liagora_japonica_LC066218:0.00148181,Liagora_japonica_LC066217:0.00141314,Liagora_japonica_LC066219:0.00305858,((((((Akalaphycus_setchelliae_KP238491:0.0557139,(Akalaphycus_liagoroides_KC134343:0.0248338,(Akalaphycus_setchelliae_GU357697:0.0125296,Akalaphycus_setchelliae_GU357698:0.00842862)1.000:0.0228027)0.971:0.0172705)1.000:0.105988,(Yoshizakia_indopacifica_JX878374:0.00134358,Yoshizakia_indopacifica_JX878375:0.00467937,Yoshizakia_indopacifica_JX878377:5.86251E-4,Yoshizakia_indopacifica_JX878378:0.00137414)1.000:0.126201)0.697:0.0245564,((Titanophycus_setchellii_JX878373:7.28256E-4,(Titanophycus_setchellii_GU357694:0.00795282,Titanophycus_setchellii_JX878372:0.00526668)0.666:0.00150339)0.876:0.0107838,(Titanophycus_validus_GU357692:0.0025104,Titanophycus_validus_GU357693:0.00425499)0.998:0.0118475)1.000:0.125962)1.000:0.0561209,((Stenopeltis_gracilis_GU357695:0.22765,((((((Cumagloia_andersonii_JX878365:0.193517,(Helminthocladia_australis_GU357701:0.030104,Helminthocladia_calvadosii_KP238492:0.034259)0.997:0.0558309)1.000:0.108134,(Dermonema_virens_KF667091:0.00370413,Dermonema_virens_HQ901787:0.00872079)1.000:0.247799)1.000:0.109092,((Ganonema_farinosum_KF667109:0.00350611,Ganonema_farinosum_GU357699:0.00749101)0.749:0.00535187,(Ganonema_farinosum_KF667111:0.00335866,Ganonema_farinosum_GU357700:0.00755691)0.543:0.00425019)1.000:0.346711)0.504:0.0512238,((((Liagoropsis_maxima_KP266617:0.309937,(Tricleocarpa_cylindrica_KC768145:0.0824555,(Actinotrichia_fragilis_KC609399:0.16067,Galaxaura_rugosa_AB258448:0.131993)1.000:0.0781725)1.000:0.211849)0.812:0.0370808,((Nemalion_multifidum_KC134329:9.33564E-4,(Nemalion_multifidum_KP238498:0.00118604,Nemalion_multifidum_KP238499:5.45752E-4)0.617:0.00116776)1.000:0.137172,(Nemalion_vermiculare_LC066221:6.42268E-4,Nemalion_vermiculare_KP238497:0.00203633)1.000:0.105885)1.000:0.313883)0.916:0.0331039,(Scinaia_chinensis_KP238505:0.106797,(Scinaia_confusa_KC134333:0.0748868,(Scinaia_complanata_KP238506:0.0664002,Scinaia_hormoides_KP238507:0.0991349)1.000:0.0734138)0.877:0.0315509)1.000:0.233262)0.983:0.0393479,(Yamadaella_caenomyce_KP238501:8.32094E-4,Yamadaella_caenomyce_KP238502:0.00159626)1.000:0.438576)1.000:0.0603961)0.655:0.0469951,((Gloiocallis_dendroidea_KF667101:0.160855,(Trichogloeopsis_mucosissima_KF667107:0.0331546,Trichogloeopsis_pedicellata_KF667108:0.0253948)1.000:0.170008)0.999:0.0927742,(Hommersandiophycus_clavatus_KF667098:0.172511,(Hommersandiophycus_borowitzkae_KF667093:0.0213197,Hommersandiophycus_samaensis_KF667102:0.0792746)1.000:0.0610712)1.000:0.102071)0.986:0.0487615)0.545:0.0286535,(Helminthora_divaricata_KP238494:0.0965577,Helminthora_lindaueri_KP238496:0.135606)1.000:0.134753)1.000:0.0654963)0.741:0.0218683,(Izziella_formosana_GU357688:0.144064,Izziella_hommersandii_GU357690:0.139477,(Izziella_kuroshioensis_GU357684:0.00177487,Izziella_kuroshioensis_GU357685:9.1754E-4)1.000:0.117257,(Liagora_albicans_HQ901786:0.118489,((Liagora_boergesenii_GU357679:0.0502784,(Liagora_ceranoides_GU357681:0.00236869,(Liagora_ceranoides_GU357682:0.00145866,Liagora_ceranoides_JX878367:0.00125039)0.588:0.00191727)1.000:0.124544)0.800:0.0227914,(Liagora_harveyana_HM572263:0.0507978,(Liagora_viscida_GU357678:6.78483E-4,Liagora_viscida_HM572262:0.00229053)1.000:0.0562679)1.000:0.0723898)0.901:0.0376896)1.000:0.0669264)1.000:0.0666148)0.999:0.0410991)1.000:0.0424313,(Neoizziella_divaricata_HQ901781:0.0612376,(Neoizziella_asiatica_HQ901777:7.97178E-4,(Neoizziella_asiatica_HQ901789:6.69647E-4,Neoizziella_asiatica_JX878370:0.00157582,(Neoizziella_asiatica_JX878371:0.00456042,(Neoizziella_asiatica_HQ901778:0.00156511,Neoizziella_asiatica_HQ901780:6.45773E-4)0.999:0.00356424)0.815:0.00161109)0.998:0.00325535)1.000:0.0581245)1.000:0.0512427)0.796:0.0174178,(Macrocarpus_perennis_JX878368:0.00170036,(Macrocarpus_perennis_JX878369:6.16451E-4,(Macrocarpus_perennis_HQ901783:0.00151205,Macrocarpus_perennis_HQ901785:6.27322E-4)0.985:0.00410425)0.764:0.00246178)1.000:0.130298)1.000:0.080997); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr93609] END;