#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 17, 2024; 3:47 GMT

TreeBASE (cc) 1994-2008

Study reference:
Fisher A.E., Hasenstab K.M., Bell H., Blaine E., Ingram A.L., & Columbus J. 2016.
Evolutionary history of chloridoid grasses estimated from 122 nuclear loci. Molecular
Phylogenetics and Evolution, 105: 1-14.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S19162]

BEGIN TAXA;
        TITLE  Chloridoid_All_Loci_Alignment;
        DIMENSIONS NTAX=50;
        TAXLABELS
            Acrachne_racemosa
            Aeluropus_pungens_var._pungens
            Aristida_pallens_var._geminata
            Astrebla_pectinata
            Bouteloua_dactyloides
            Bouteloua_gracilis
            Capeochloa_cincta
            Centropodia_glauca
            Cottea_pappophoroides
            Ctenium_concinnum
            Dactyloctenium_aegyptium
            Diandrochloa_namaquensis_var._namaquensis
            Dinebra_retroflexa_var._retroflexa
            Distichlis_bajaensis
            Ellisochloa_rangei
            Eragrostis_sessilispica
            Eragrostis_tef
            Eriachne_pallescens
            Farrago_racemosa
            Fingerghuthia_cf._africana
            Hilaria_rigida
            Jouvea_pilosa
            Kaokochloa_nigrirostris
            Microchloa_caffra
            Monachather_paradoxa
            Muhlenbergia_emersleyi
            Muhlenbergia_paniculata
            Munroa_squarrosa
            Odyssea_paucinervis
            Orcuttia_tenuis
            Oryza_sativa
            Perotis_hildebrandtii
            Pogonarthria_squarrosa
            Sorghum_bicolor
            Sporobolus_arcuatus
            Sporobolus_coromandelianus
            Sporobolus_heterolepis
            Sporobolus_maritimus
            Sporobolus_schoenoides
            Sporobolus_stapfianus
            Sporobolus_subtilis
            Swallenia_alexandrae
            Tragus_berteronianus
            Tridens_brasiliensis
            Triodia_pungens
            Tripogon_cf._major
            Triraphis_mollis
            Uniolinae_sp.
            Urochondra_setulosa
            Zea_mays
            ;
END;

BEGIN TREES;
      TITLE Chloridoid_Housekeeping56_BI;
      LINK TAXA = Chloridoid_All_Loci_Alignment;
      TREE con_50_majrule = [&R] (Oryza_sativa:0.07664935,((Sorghum_bicolor:0.03907054,Zea_mays:0.05726413):0.05377004,(Eriachne_pallescens:0.07652734,(Aristida_pallens_var._geminata:0.08879493,(Monachather_paradoxa:0.04303953,((Capeochloa_cincta:0.03631775,(Centropodia_glauca:0.05289094,Ellisochloa_rangei:0.04239003):0.01454157):0.003237916,(Triraphis_mollis:0.06023151,(((Cottea_pappophoroides:0.03492085,Kaokochloa_nigrirostris:0.04831044):0.01124416,(Fingerghuthia_cf._africana:0.04719198,(Uniolinae_sp.:0.026804,((Diandrochloa_namaquensis_var._namaquensis:0.03052478,Eragrostis_sessilispica:0.03210755):0.007583308,(Sporobolus_subtilis:0.0385069,(Eragrostis_tef:0.04238734,Pogonarthria_squarrosa:0.03539613):0.007689626):0.002700794):0.009283067):0.003215472):0.00508686):0.0125309,((Urochondra_setulosa:0.04714703,(Sporobolus_stapfianus:0.07447364,((Sporobolus_schoenoides:0.04921518,Sporobolus_coromandelianus:0.0712359):0.007440066,(Sporobolus_maritimus:0.03064114,(Sporobolus_arcuatus:0.03146194,Sporobolus_heterolepis:0.04283123):0.003853945):0.01095724):0.006756079):0.007776296):0.01147378,(((Orcuttia_tenuis:0.07114342,Triodia_pungens:0.04451541):0.004178289,((Hilaria_rigida:0.06038162,Tridens_brasiliensis:0.04850041):0.005011481,(Distichlis_bajaensis:0.0436143,((Munroa_squarrosa:0.05013591,Swallenia_alexandrae:0.02890055):0.006976253,((Muhlenbergia_emersleyi:0.03610593,Muhlenbergia_paniculata:0.03751377):0.01618533,(Jouvea_pilosa:0.06515773,(Bouteloua_dactyloides:0.05519462,Bouteloua_gracilis:0.03490483):0.0196208):0.00174102):0.002488792):0.008895354):0.004043414):0.004671842):0.002518838,((Tripogon_cf._major:0.06747285,(Ctenium_concinnum:0.07863017,(Farrago_racemosa:0.07519093,Perotis_hildebrandtii:0.06090193):0.006090008):0.01033917):0.005204016,((Aeluropus_pungens_var._pungens:0.03901116,Odyssea_paucinervis:0.02677778):0.01129845,(Tragus_berteronianus:0.07648666,((Acrachne_racemosa:0.03154619,Dactyloctenium_aegyptium:0.050475):0.01518036,(Dinebra_retroflexa_var._retroflexa:0.05082649,(Astrebla_pectinata:0.03618339,Microchloa_caffra:0.06159199):0.00738929):0.003490526):0.00346416):0.003774358):0.003921475):0.003370909):0.004444116):0.01263148):0.01629283):0.01802523):0.003722466):0.006623851):0.00491479):0.0109454):0.07664935);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr95257]


END;