#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on April 26, 2024; 11:54 GMT TreeBASE (cc) 1994-2008 Study reference: Liu J., Li Y., Wang W., Gai J., & Li Y. 2016. Genome-wide analysis of MATE transporters and expression patterns of a subgroup of MATE genes in response to aluminum toxicity in soybean. BMC Genomics, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S18947] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=152; TAXLABELS Arabidopsis_thaliana_AtADS1 Arabidopsis_thaliana_AtALF5 Arabidopsis_thaliana_AtDTX1 Arabidopsis_thaliana_AtDTX50 Arabidopsis_thaliana_AtEDS5 Arabidopsis_thaliana_AtFFT Arabidopsis_thaliana_AtFRD3 Arabidopsis_thaliana_AtMATE Arabidopsis_thaliana_AtTT12 Arabidopsis_thaliana_AtZF14 Brassica_oleracea_BoMATE Brassica_rapa_BrTT12 Eucalyptus_camaldulensis_EcMATE1 Glycine_max_GmMATE1 Glycine_max_GmMATE10 Glycine_max_GmMATE100 Glycine_max_GmMATE101 Glycine_max_GmMATE102 Glycine_max_GmMATE103 Glycine_max_GmMATE104 Glycine_max_GmMATE105 Glycine_max_GmMATE106 Glycine_max_GmMATE107 Glycine_max_GmMATE108 Glycine_max_GmMATE109 Glycine_max_GmMATE11 Glycine_max_GmMATE110 Glycine_max_GmMATE111 Glycine_max_GmMATE112 Glycine_max_GmMATE113 Glycine_max_GmMATE114 Glycine_max_GmMATE115 Glycine_max_GmMATE116 Glycine_max_GmMATE117 Glycine_max_GmMATE12 Glycine_max_GmMATE13 Glycine_max_GmMATE14 Glycine_max_GmMATE15 Glycine_max_GmMATE16 Glycine_max_GmMATE17 Glycine_max_GmMATE18 Glycine_max_GmMATE19 Glycine_max_GmMATE2 Glycine_max_GmMATE20 Glycine_max_GmMATE21 Glycine_max_GmMATE22 Glycine_max_GmMATE23 Glycine_max_GmMATE24 Glycine_max_GmMATE25 Glycine_max_GmMATE26 Glycine_max_GmMATE27 Glycine_max_GmMATE28 Glycine_max_GmMATE29 Glycine_max_GmMATE3 Glycine_max_GmMATE30 Glycine_max_GmMATE31 Glycine_max_GmMATE32 Glycine_max_GmMATE33 Glycine_max_GmMATE34 Glycine_max_GmMATE35 Glycine_max_GmMATE36 Glycine_max_GmMATE37 Glycine_max_GmMATE38 Glycine_max_GmMATE39 Glycine_max_GmMATE4 Glycine_max_GmMATE40 Glycine_max_GmMATE41 Glycine_max_GmMATE42 Glycine_max_GmMATE43 Glycine_max_GmMATE44 Glycine_max_GmMATE45 Glycine_max_GmMATE46 Glycine_max_GmMATE47 Glycine_max_GmMATE48 Glycine_max_GmMATE49 Glycine_max_GmMATE5 Glycine_max_GmMATE50 Glycine_max_GmMATE51 Glycine_max_GmMATE52 Glycine_max_GmMATE53 Glycine_max_GmMATE54 Glycine_max_GmMATE55 Glycine_max_GmMATE56 Glycine_max_GmMATE57 Glycine_max_GmMATE58 Glycine_max_GmMATE59 Glycine_max_GmMATE6 Glycine_max_GmMATE60 Glycine_max_GmMATE61 Glycine_max_GmMATE62 Glycine_max_GmMATE63 Glycine_max_GmMATE64 Glycine_max_GmMATE65 Glycine_max_GmMATE66 Glycine_max_GmMATE67 Glycine_max_GmMATE68 Glycine_max_GmMATE69 Glycine_max_GmMATE7 Glycine_max_GmMATE70 Glycine_max_GmMATE71 Glycine_max_GmMATE72 Glycine_max_GmMATE73 Glycine_max_GmMATE74 Glycine_max_GmMATE75 Glycine_max_GmMATE76 Glycine_max_GmMATE77 Glycine_max_GmMATE78 Glycine_max_GmMATE79 Glycine_max_GmMATE8 Glycine_max_GmMATE80 Glycine_max_GmMATE81 Glycine_max_GmMATE82 Glycine_max_GmMATE83 Glycine_max_GmMATE84 Glycine_max_GmMATE85 Glycine_max_GmMATE86 Glycine_max_GmMATE87 Glycine_max_GmMATE88 Glycine_max_GmMATE89 Glycine_max_GmMATE9 Glycine_max_GmMATE90 Glycine_max_GmMATE91 Glycine_max_GmMATE92 Glycine_max_GmMATE93 Glycine_max_GmMATE94 Glycine_max_GmMATE95 Glycine_max_GmMATE96 Glycine_max_GmMATE97 Glycine_max_GmMATE98 Glycine_max_GmMATE99 Hordeum_vulgare_HvMATE Medicago_truncatula_MtAC122162 Medicago_truncatula_MtMATE1 Medicago_truncatula_MtMATE2 Nicotiana_tabacum_NtJAT1 Nicotiana_tabacum_NtMATE1 Nicotiana_tabacum_NtMATE2 Oryza_sativa_OsFRDL1 Oryza_sativa_OsFRDL4 Populus_trichocarpa_PtMATE Ricinus_communis_RcEEF49069 Ricinus_communis_RcMATE1 Secale_cereale_ScFRDL1 Secale_cereale_ScFRDL2 Solanum_lycopersicum_SlMATE Sorghum_bicolor_SbMATE Triticum_aestivum_TaMATE Triticum_aestivum_TaMATE1B Vitis_vinifera_VvAM1 Vitis_vinifera_VvAM3 Vitis_vinifera_VvMATE1 Zea_mays_ZmMATE1 ; END; BEGIN TREES; TITLE MATE_genes_in_response_to_aluminum_toxicity_in_soybean; LINK TAXA = Taxa; TREE Fig._2 = [&R] ((Glycine_max_GmMATE112:0.892985,(((Arabidopsis_thaliana_AtEDS5:0.39214,(Glycine_max_GmMATE69:0.052317,Glycine_max_GmMATE70:0.081325):0.139416):1.854567,((Glycine_max_GmMATE15:0.067835,Glycine_max_GmMATE80:0.04409):0.581545,(Glycine_max_GmMATE40:0.02201,Glycine_max_GmMATE101:0.0899):0.430675):0.098996):0.402158,((Zea_mays_ZmMATE1:0.119642,Secale_cereale_ScFRDL2:0.14291):0.253871,((Eucalyptus_camaldulensis_EcMATE1:0.276086,(Arabidopsis_thaliana_AtFRD3:0.287465,((Glycine_max_GmMATE74:0.163126,Glycine_max_GmMATE75:0.190873):0.057219,(Medicago_truncatula_MtAC122162:0.127044,(Glycine_max_GmMATE47:0.020304,Glycine_max_GmMATE87:0.004885):0.090692):0.061903):0.171131):0.033227):0.24316,(((Glycine_max_GmMATE13:0.013627,Glycine_max_GmMATE58:0.037052):0.33371,((Glycine_max_GmMATE79:0.029521,Glycine_max_GmMATE84:0.027072):0.205108,(Arabidopsis_thaliana_AtMATE:0.058353,Brassica_oleracea_BoMATE:0.047019):0.19372):0.044988):0.0557,((Oryza_sativa_OsFRDL4:0.180943,Sorghum_bicolor_SbMATE:0.17283):0.165996,(Oryza_sativa_OsFRDL1:0.065779,(Hordeum_vulgare_HvMATE:0.020698,(Triticum_aestivum_TaMATE1B:0.00321,(Triticum_aestivum_TaMATE:0.003708,Secale_cereale_ScFRDL1:0.018695):0.002415):0.028129):0.073947):0.139189):0.31221):0.024234):0.019379):2.0E-4):1.81435E-5):1.1699169999999999,((((Glycine_max_GmMATE5:0.025208,Glycine_max_GmMATE68:0.044883):0.144726,(Glycine_max_GmMATE96:0.05453,(Glycine_max_GmMATE30:0.067997,(Glycine_max_GmMATE29:0.051562,Glycine_max_GmMATE95:0.06957):0.031349):0.010016):0.09971):0.655599,(((Glycine_max_GmMATE4:0.02902,Glycine_max_GmMATE22:9.07676E-7):0.151258,(Glycine_max_GmMATE57:0.02774,Glycine_max_GmMATE102:0.018192):0.132017):0.511532,(((Arabidopsis_thaliana_AtADS1:0.290659,((Glycine_max_GmMATE1:0.041111,Glycine_max_GmMATE39:0.143116):0.113792,(Glycine_max_GmMATE31:0.040186,Glycine_max_GmMATE42:0.027608):0.155776):0.127531):0.209366,((Glycine_max_GmMATE9:0.017373,Glycine_max_GmMATE89:0.00119):0.403361,((Glycine_max_GmMATE41:0.032991,Glycine_max_GmMATE93:0.043138):0.099164,(Glycine_max_GmMATE46:0.050849,Glycine_max_GmMATE86:0.022094):0.10545):0.389875):0.265304):0.087134,((Arabidopsis_thaliana_AtZF14:0.220041,(Glycine_max_GmMATE14:0.102422,(Glycine_max_GmMATE23:0.055107,Glycine_max_GmMATE32:0.031711):0.122413):0.082909):0.290541,(Arabidopsis_thaliana_AtDTX50:0.483372,(((Glycine_max_GmMATE6:0.03592,Glycine_max_GmMATE67:0.032155):0.128484,(Glycine_max_GmMATE28:0.047469,Glycine_max_GmMATE94:0.038492):0.126803):0.159129,((Glycine_max_GmMATE51:0.02742,Glycine_max_GmMATE92:0.028718):0.102176,(Glycine_max_GmMATE61:0.035311,Glycine_max_GmMATE116:0.041695):0.107327):0.160663):0.077428):0.110247):0.07631):0.097263):0.268643):0.29317,((((Arabidopsis_thaliana_AtALF5:0.31738,(Glycine_max_GmMATE78:0.205198,(Glycine_max_GmMATE76:0.040816,(Glycine_max_GmMATE73:0.07053,Glycine_max_GmMATE77:0.042363):0.105009):0.117323):0.14108):0.640716,((Glycine_max_GmMATE43:0.13832,Glycine_max_GmMATE55:0.134189):0.133426,((Glycine_max_GmMATE44:0.247247,Glycine_max_GmMATE54:0.214838):0.082868,(Glycine_max_GmMATE36:0.174783,((Glycine_max_GmMATE37:0.025814,Glycine_max_GmMATE53:0.023497):0.092521,(Glycine_max_GmMATE38:0.052346,Glycine_max_GmMATE52:0.516757):0.099269):0.084625):0.229437):0.044504):0.192162):0.04805,((Arabidopsis_thaliana_AtDTX1:0.512173,(Nicotiana_tabacum_NtJAT1:0.269176,(Glycine_max_GmMATE12:0.046257,(Glycine_max_GmMATE35:0.007692,Glycine_max_GmMATE104:0.006247):0.013535):0.230346):0.107214):0.01594,(((Glycine_max_GmMATE10:0.023043,(Glycine_max_GmMATE88:0.705245,(Glycine_max_GmMATE99:0.054527,Glycine_max_GmMATE106:1.0E-8):0.028873):0.0712):0.272501,((Glycine_max_GmMATE11:0.028335,Glycine_max_GmMATE105:0.012893):0.166622,(Glycine_max_GmMATE27:0.025887,Glycine_max_GmMATE107:0.0128):0.101123):0.193042):0.128922,((Glycine_max_GmMATE114:0.063091,(Glycine_max_GmMATE66:0.097118,Glycine_max_GmMATE113:0.035218):0.046027):0.265745,((Glycine_max_GmMATE65:0.022887,Glycine_max_GmMATE115:0.033373):0.102939,((Glycine_max_GmMATE26:0.100201,Glycine_max_GmMATE33:0.049059):0.061367,(Glycine_max_GmMATE62:0.102245,(Glycine_max_GmMATE63:0.060857,Glycine_max_GmMATE64:0.068933):0.007812):0.030349):0.075389):0.152702):0.193495):0.02952):0.297214):0.081719,((((Glycine_max_GmMATE81:0.082201,Medicago_truncatula_MtMATE1:0.106234):0.07949,(Vitis_vinifera_VvMATE1:0.161416,(Arabidopsis_thaliana_AtTT12:0.029224,Brassica_rapa_BrTT12:0.046795):0.186076):0.027424):0.470242,((Glycine_max_GmMATE72:0.100205,(Glycine_max_GmMATE34:0.012993,Glycine_max_GmMATE71:0.107959):0.087932):0.10725,(Glycine_max_GmMATE85:0.211758,(Nicotiana_tabacum_NtMATE1:0.018941,Nicotiana_tabacum_NtMATE2:0.018642):0.182971):0.061579):0.240691):0.102685,((((Glycine_max_GmMATE59:0.27032,Glycine_max_GmMATE97:1.762673):1.0E-4,((Glycine_max_GmMATE50:0.030501,Glycine_max_GmMATE91:0.034014):0.074635,(Glycine_max_GmMATE49:0.113309,(Glycine_max_GmMATE48:0.152508,Glycine_max_GmMATE90:0.030716):0.061047):0.01398):0.22748):0.205515,(((Glycine_max_GmMATE56:0.032692,Glycine_max_GmMATE103:0.025408):0.227302,(Ricinus_communis_RcMATE1:0.138697,Populus_trichocarpa_PtMATE:0.06437):0.086728):0.115452,((Medicago_truncatula_MtMATE2:0.144136,(Glycine_max_GmMATE60:0.024186,Glycine_max_GmMATE117:0.019435):0.100676):0.162284,((Solanum_lycopersicum_SlMATE:0.207984,Arabidopsis_thaliana_AtFFT:0.196799):0.039322,(Ricinus_communis_RcEEF49069:0.123911,(Vitis_vinifera_VvAM1:0.087394,Vitis_vinifera_VvAM3:0.055989):0.18387):0.017533):0.042477):0.038198):0.064953):0.345932,(((Glycine_max_GmMATE82:0.051299,Glycine_max_GmMATE98:0.020004):0.30897,((Glycine_max_GmMATE3:0.025885,Glycine_max_GmMATE7:0.079195):0.196983,(Glycine_max_GmMATE83:0.176094,Glycine_max_GmMATE100:5.74E-4):0.180366):0.256916):0.10193,((Glycine_max_GmMATE8:0.35995,(Glycine_max_GmMATE2:0.137215,(Glycine_max_GmMATE24:0.474897,Glycine_max_GmMATE25:0.225305):0.058644):0.084207):0.236419,(Glycine_max_GmMATE108:0.181739,((Glycine_max_GmMATE19:0.112421,(Glycine_max_GmMATE20:0.037705,Glycine_max_GmMATE110:0.029387):0.051534):0.026903,((Glycine_max_GmMATE21:0.017386,Glycine_max_GmMATE109:0.032261):0.097086,(Glycine_max_GmMATE18:0.04962,(Glycine_max_GmMATE16:0.041024,(Glycine_max_GmMATE111:0.02221,(Glycine_max_GmMATE17:0.030331,Glycine_max_GmMATE45:0.180389):0.008268):0.017214):0.022352):0.069189):0.01204):0.116314):0.330371):0.206515):0.001571):0.171648):0.417322):0.178355):1.1699169999999999):0.0; [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr96582] END;