#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 17, 2024; 23:16 GMT

TreeBASE (cc) 1994-2008

Study reference:
Miadlikowska J.M., Richardson D., Magain N., Ball B., Anderson F., Cameron R., Lendemer
J., Truong C., & Lutzoni F. 2014. Phylogenetic placement, species delimitation,
and cyanobiont identity of endangered aquatic Peltigera species (lichen-forming
Ascomycota, Lecanoromycetes). American Journal of Botany, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S15894]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=52;
        TAXLABELS
            Peltigera_aphthosa_P1321
            Peltigera_aphthosa_P788
            Peltigera_aquatica_HV12
            Peltigera_aquatica_HV14
            Peltigera_aquatica_HV16
            Peltigera_aquatica_HV17
            Peltigera_aquatica_HV18
            Peltigera_aquatica_HV19
            Peltigera_aquatica_P1430
            Peltigera_aquatica_P1434
            Peltigera_britannica_P227
            Peltigera_britannica_P228
            Peltigera_dolichorrza_P348
            Peltigera_frippii_P1370
            Peltigera_gowardii_HV13
            Peltigera_gowardii_HV22
            Peltigera_gowardii_P1417
            Peltigera_gowardii_P1418
            Peltigera_gowardii_P1419
            Peltigera_gowardii_P1420
            Peltigera_gowardii_P1421
            Peltigera_gowardii_P1422
            Peltigera_gowardii_P1423
            Peltigera_gowardii_P1429
            Peltigera_hydrothyria_HV01
            Peltigera_hydrothyria_HV02
            Peltigera_hydrothyria_HV03
            Peltigera_hydrothyria_HV04
            Peltigera_hydrothyria_HV06
            Peltigera_hydrothyria_HV07
            Peltigera_hydrothyria_HV20
            Peltigera_hydrothyria_HV21
            Peltigera_hydrothyria_HV25
            Peltigera_hydrothyria_P1492
            Peltigera_hydrothyria_P1493
            Peltigera_hydrothyria_P1494
            Peltigera_hydrothyria_P1495
            Peltigera_hydrothyria_P1496
            Peltigera_hydrothyria_P1497
            Peltigera_hydrothyria_P1498
            Peltigera_hydrothyria_P1845
            Peltigera_latiloba_P1175
            Peltigera_latiloba_P210
            Peltigera_leucophlebia_P1329
            Peltigera_leucophlebia_P1333
            Peltigera_malacea_P1028
            Peltigera_malacea_P1363
            Peltigera_pacifica_P443
            Peltigera_polydactylon_P385
            Peltigera_scabrosa_P107
            Peltigera_venosa_P1905
            Peltigera_venosa_P69
            ;
END;

BEGIN TREES;
      TITLE ML2_data_set_hydrothyriae;
      LINK TAXA = Taxa;
      TREE Tree_1 = [&R] ((Peltigera_scabrosa_P107:0.01418492,(Peltigera_polydactylon_P385:0.01397874,(Peltigera_dolichorrza_P348:0.00457484,Peltigera_pacifica_P443:0.00351169):0.00648347):0.00857874):0.009666995,((((Peltigera_venosa_P69:0.00610028,Peltigera_venosa_P1905:0.00655415):0.04580894,((Peltigera_latiloba_P210:1.57362876258362E-6,Peltigera_latiloba_P1175:1.57362876258362E-6):0.00511991,(Peltigera_leucophlebia_P1329:9.8721E-4,Peltigera_leucophlebia_P1333:0.00492152):9.942E-4):0.0200656):0.01308897,((Peltigera_frippii_P1370:1.57362876258362E-6,(Peltigera_malacea_P1028:1.57362876258362E-6,Peltigera_malacea_P1363:1.57362876258362E-6):0.00121595):0.00267899,((Peltigera_britannica_P227:1.57362876258362E-6,Peltigera_britannica_P228:1.57362876258362E-6):0.00243925,(Peltigera_aphthosa_P788:0.00122768,Peltigera_aphthosa_P1321:9.8614E-4):0.0012117):0.00221309):0.02934792):0.00492861,((Peltigera_gowardii_HV22:1.57362876258362E-6,(Peltigera_gowardii_HV13:1.57362876258362E-6,(Peltigera_gowardii_P1420:1.57362876258362E-6,((Peltigera_gowardii_P1417:1.57362876258362E-6,Peltigera_gowardii_P1419:1.57362876258362E-6):1.57362876258362E-6,(Peltigera_gowardii_P1421:1.57362876258362E-6,(Peltigera_gowardii_P1422:1.57362876258362E-6,(Peltigera_gowardii_P1429:1.57362876258362E-6,(Peltigera_gowardii_P1418:1.57362876258362E-6,Peltigera_gowardii_P1423:1.57362876258362E-6):1.57362876258362E-6):1.57362876258362E-6):1.57362876258362E-6):1.57362876258362E-6):1.57362876258362E-6):1.57362876258362E-6):1.57362876258362E-6):0.00661255,((Peltigera_aquatica_P1434:1.57362876258362E-6,(Peltigera_aquatica_HV12:1.57362876258362E-6,(Peltigera_aquatica_HV17:1.57362876258362E-6,(Peltigera_aquatica_HV14:1.57362876258362E-6,(Peltigera_aquatica_HV16:1.57362876258362E-6,(Peltigera_aquatica_HV19:1.57362876258362E-6,(Peltigera_aquatica_HV18:1.57362876258362E-6,Peltigera_aquatica_P1430:1.57362876258362E-6):1.57362876258362E-6):1.57362876258362E-6):1.57362876258362E-6):1.57362876258362E-6):1.57362876258362E-6):1.57362876258362E-6):0.00457032,((Peltigera_hydrothyria_P1496:1.57362876258362E-6,(Peltigera_hydrothyria_HV06:1.57362876258362E-6,(Peltigera_hydrothyria_HV03:1.57362876258362E-6,(Peltigera_hydrothyria_HV07:1.57362876258362E-6,(Peltigera_hydrothyria_HV25:1.57362876258362E-6,Peltigera_hydrothyria_P1845:3.8582E-4):4.76505612202806E-6):1.57362876258362E-6):1.57362876258362E-6):1.57362876258362E-6):1.57362876258362E-6,((Peltigera_hydrothyria_P1493:1.57362876258362E-6,(Peltigera_hydrothyria_P1492:1.57362876258362E-6,Peltigera_hydrothyria_P1494:1.57362876258362E-6):1.57362876258362E-6):1.57362876258362E-6,(Peltigera_hydrothyria_P1498:1.57362876258362E-6,((Peltigera_hydrothyria_HV21:1.57362876258362E-6,(Peltigera_hydrothyria_HV02:1.57362876258362E-6,Peltigera_hydrothyria_P1495:1.57362876258362E-6):1.57362876258362E-6):1.57362876258362E-6,((Peltigera_hydrothyria_HV01:1.57362876258362E-6,Peltigera_hydrothyria_P1497:1.57362876258362E-6):1.57362876258362E-6,(Peltigera_hydrothyria_HV04:1.57362876258362E-6,Peltigera_hydrothyria_HV20:1.57362876258362E-6):1.57362876258362E-6):1.57362876258362E-6):1.57362876258362E-6):1.57362876258362E-6):1.57362876258362E-6):0.00866543):0.00669069):0.03492237):0.009666995);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr97015]


END;