#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 18, 2024; 12:42 GMT

TreeBASE (cc) 1994-2008

Study reference:
Molina C., Divakar P.K., Goward T., Millanes A.M., Lumbsch H.T., & Crespo A. 2016.
Neogene Diversification in the Temperate Lichen-Forming Fungal Genus Parmelia
(Parmeliaceae, Ascomycota). Systematics & Biodiversity, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S19387]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=65;
        TAXLABELS
            Parmelia_armelia_saxatilis_MAF6804
            'Parmelia armelia sulcata Germany_MAF10159'
            'Parmelia barreno Ref_69_19_270109'
            'Parmelia barrenoae 10_80903_9900MAF'
            'Parmelia barrenoae 3_301003'
            'Parmelia cf fertilis 6_190410'
            'Parmelia cf fertilis 7_080310_REF_77'
            'Parmelia cf saxatilis Turquia_655'
            'Parmelia cf sulcata T18_270109_REF63'
            'Parmelia discordans Maf_20232'
            Parmelia_encriptata_202
            Parmelia_encriptata_203
            'Parmelia encriptata PSULHERT1_1_301003'
            Parmelia_ernstiae_297
            Parmelia_ernstiae_387
            'Parmelia fertilis JAPON_8_150301_7280MAF'
            'Parmelia fertilis MAF298_6019m_13_140410'
            'Parmelia fraudans 1_080310_Ref17'
            'Parmelia fraudans 2_080310_Ref15'
            'Parmelia fraudans 2_270109_REF16'
            'Parmelia fraudans 3_080310_Ref19'
            'Parmelia friabilis 1_270109_REf8'
            'Parmelia friabilis 20_270109_REF71'
            'Parmelia friabilis 26_270109_REF80'
            'Parmelia friabilis 67_231209_REF36'
            'Parmelia friabilis 70_231209_REF79'
            'Parmelia graduans 12_080310_Ref20'
            'Parmelia graduans 72_231209_ref24'
            'Parmelia hightstownensis 2_080305_NJ'
            Parmelia_hygrophila_1022
            'Parmelia hygrophila 36_270109_REF95'
            'Parmelia hygrophila 5_270109_REF25'
            'Parmelia hygrophiloide 13_080310_REF56'
            'Parmelia hygrophiloide 14_080310_REF27'
            'Parmelia hygrophiloides 6_270109_REF26'
            'Parmelia marginalis T7_270109_REF30'
            'Parmelia marginalis T8_270109_REF31'
            Parmelia_mayii_521USAMassachusetts
            Parmelia_mayii_522USAMassachusetts
            Parmelia_mayii_523USAMassachusetts
            Parmelia_omphalodes_Plataf7062MAF
            'Parmelia praesquarrosa 18_030609_Corea61'
            'Parmelia saxatilis 13_270109_REF44'
            'Parmelia saxatilis 14_270109_REF45'
            'Parmelia saxatilis 3_221107_MontanaUSA'
            'Parmelia saxatilis 8_221107_ScotlandUK'
            'Parmelia saxatilis 9_270109_REF35'
            Parmelia_saxatilis_Wedin7091
            Parmelia_serrana_MAF9756
            'Parmelia signifera Canberra_7283MAF'
            'Parmelia skultii 13_080305_ALASKA'
            'Parmelia squarrosa 6_030609_Corea49'
            'Parmelia stenosulcata 15_270109ref47'
            'Parmelia submontana 40_200309'
            'Parmelia submontana 9_140104_maf3729'
            'Parmelia sulcata 204_MAF_15419MAF'
            'Parmelia sulcata 357_MAF_15421MAF_EPITOP'
            'Parmelia sulcata 358_MSG_15418MAF'
            'Parmelia sulcata Elena280809_3NJ_76_231209'
            'Parmelia sulcata NJ2_140710'
            'Parmelia sulcata NJ3_140710'
            'Parmelia sulcata T16_270109_REF49'
            'Parmelia sulcata T27_270109_REF83'
            'Parmelia sulcata T28_270109_REF84'
            'Parmelia sulcata T37_270109_REF96'
            ;
END;

BEGIN TREES;
      TITLE Parmelia_Comb_ITS_MCM7;
      LINK TAXA = Taxa;
      TREE con_all_compat = [&R] ('Parmelia signifera Canberra_7283MAF':0.0633718241661805,('Parmelia skultii 13_080305_ALASKA':0.06672681259086582,(((('Parmelia barreno Ref_69_19_270109':0.001461979455838636,('Parmelia barrenoae 10_80903_9900MAF':7.006837798685797E-4,'Parmelia barrenoae 3_301003':6.944761411790843E-4):0.003212129577237931):0.0130552857142712,(('Parmelia cf sulcata T18_270109_REF63':0.002841648199770958,('Parmelia praesquarrosa 18_030609_Corea61':0.009826758454327043,'Parmelia squarrosa 6_030609_Corea49':0.01164941622917324):0.0107893800432143):0.003449465393134415,(Parmelia_encriptata_202:0.001699320237609505,(Parmelia_encriptata_203:6.98932776605306E-4,'Parmelia encriptata PSULHERT1_1_301003':7.127194509009215E-4):7.218272731279061E-4):0.01117953591316806):0.002133358173534494):0.007601122316223874,(('Parmelia fraudans 2_080310_Ref15':0.01229331970765314,('Parmelia fraudans 3_080310_Ref19':7.764840045691869E-4,('Parmelia fraudans 1_080310_Ref17':0.002745600466257746,'Parmelia fraudans 2_270109_REF16':0.002576647597701932):9.68566920815293E-4):0.006706513439294039):0.006294400058726077,('Parmelia stenosulcata 15_270109ref47':0.01340306669263023,('Parmelia hightstownensis 2_080305_NJ':0.006209107595151326,(('Parmelia sulcata T37_270109_REF96':0.003516935625244032,(('Parmelia sulcata Elena280809_3NJ_76_231209':7.17820443211084E-4,'Parmelia sulcata 357_MAF_15421MAF_EPITOP':7.194272685824718E-4):6.859151776891705E-4,('Parmelia sulcata T16_270109_REF49':9.259887535903465E-4,'Parmelia sulcata 358_MSG_15418MAF':0.003533953939525096):0.001264484124221561):0.002618570644738987):0.001128718260038624,(('Parmelia sulcata NJ3_140710':0.001644802732768096,'Parmelia sulcata T27_270109_REF83':7.0713433642057E-4):7.004372164464112E-4,(('Parmelia sulcata NJ2_140710':7.048476436682671E-4,'Parmelia sulcata 204_MAF_15419MAF':6.870073753831798E-4):7.196355003669122E-4,('Parmelia sulcata T28_270109_REF84':6.983078444983632E-4,'Parmelia armelia sulcata Germany_MAF10159':0.005333628795531842):6.405148170455679E-4):6.925709527258301E-4):0.003461699808945161):0.005000916552991022):0.0037322860156386):0.004664390725635252):0.002620936287342608):0.03425941638215055,(('Parmelia cf fertilis 7_080310_REF_77':0.01235980633306271,('Parmelia fertilis JAPON_8_150301_7280MAF':0.003783987761050782,('Parmelia cf fertilis 6_190410':0.002645123485924597,'Parmelia fertilis MAF298_6019m_13_140410':0.002819655337959884):0.001037160501643102):0.01118354976172681):0.01463122226322468,((Parmelia_serrana_MAF9756:0.01065200010940933,('Parmelia hygrophiloide 13_080310_REF56':7.716545295794653E-4,('Parmelia hygrophiloide 14_080310_REF27':7.106352613593087E-4,'Parmelia hygrophiloides 6_270109_REF26':7.187693783134557E-4):7.693068996737103E-4):0.01292621626157737):0.003919393877522264,(((Parmelia_mayii_522USAMassachusetts:7.22261424422077E-4,(Parmelia_mayii_521USAMassachusetts:7.300316457177566E-4,Parmelia_mayii_523USAMassachusetts:7.286459904586178E-4):7.271041543209353E-4):0.007208371278631421,((Parmelia_hygrophila_1022:8.238328598087767E-4,'Parmelia hygrophila 36_270109_REF95':7.251671438821704E-4):0.001719232277611245,('Parmelia hygrophila 5_270109_REF25':0.001743210652677433,('Parmelia submontana 9_140104_maf3729':6.859494343441076E-4,'Parmelia submontana 40_200309':7.11306169169979E-4):0.003765599391498278):7.289131250964725E-4):0.006851404488739583):0.002096295662068017,(('Parmelia discordans Maf_20232':0.008710459489470412,Parmelia_omphalodes_Plataf7062MAF:0.005826538904786094):0.01185085226480654,((('Parmelia friabilis 26_270109_REF80':7.079040189280834E-4,'Parmelia friabilis 70_231209_REF79':6.972478155287421E-4):0.006873016982875156,('Parmelia friabilis 20_270109_REF71':0.00170607891033524,('Parmelia friabilis 1_270109_REf8':7.12666535556581E-4,'Parmelia friabilis 67_231209_REF36':7.09977920673026E-4):0.002741499388976428):0.004938122941520949):0.01296859356241909,((Parmelia_ernstiae_297:0.001348721422024678,('Parmelia cf saxatilis Turquia_655':0.003956146503601924,Parmelia_ernstiae_387:7.368632435392405E-4):0.001313326393968458):0.005820683390056451,(('Parmelia saxatilis 9_270109_REF35':0.001369244378051822,('Parmelia saxatilis 14_270109_REF45':7.036637974367665E-4,('Parmelia graduans 12_080310_Ref20':7.070097564885144E-4,'Parmelia saxatilis 3_221107_MontanaUSA':7.101831750084933E-4):6.914981286757419E-4):0.002431755687524263):0.002124666051218873,(('Parmelia marginalis T7_270109_REF30':6.98541211040563E-4,'Parmelia saxatilis 8_221107_ScotlandUK':7.08546148219301E-4):7.39311786977147E-4,(('Parmelia marginalis T8_270109_REF31':7.166592617416331E-4,'Parmelia saxatilis 13_270109_REF44':6.980364871043803E-4):7.004703438944395E-4,(Parmelia_saxatilis_Wedin7091:7.457093542273701E-4,('Parmelia graduans 72_231209_ref24':6.899306148014958E-4,Parmelia_armelia_saxatilis_MAF6804:0.002724717224569231):0.001002629888000655):0.001061671775849629):6.776752050721206E-4):0.001323567897082387):0.008178712834528873):0.005288044111090471):0.004555738278363749):0.003533154287421409):0.003332311831580703):0.01745865309493552):0.003465356380624605):0.02265267863699903):0.0633718241661805);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr97552]


END;