#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 18, 2024; 18:12 GMT TreeBASE (cc) 1994-2008 Study reference: Justo A., Vizzini A., Minnis A.M., Menolli jr N., Capelari M., Rodriguez O., Malysheva E., Contu M., Ghignone S., & Hibbett D. 2010. Phylogeny of the Pluteaceae (Agaricales, Basidiomycota): Taxonomy and Character Evolution. Fungal Biology, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S10635] BEGIN TAXA; TITLE TaxaForAnalysisStep6131; DIMENSIONS NTAX=117; TAXLABELS Agaricus_bisporus Agrocybe_praecox Amanita_brunnescens Amanita_muscaria Ampulloclitocybe_clavipes Anthracophyllum_archeri Armillaria_mellea Asterophora_lycoperdoides Athelia_rolfsii Baeospora_myosura Bolbitius_vitellinus Callistosporium_graminicolor Camarophyllopsis_hymenocephala Camarophyllus_basidiosus Cantharocybe_gruberi Catathelasma_ventricosum Cheimonophyllum_candidissimum Chondrostereum_purpureum Chrysomphalina_grossula Clavaria_zollingeri Clavulinopsis_laeticolor Clitocybe_candicans Clitocybe_nebularis Clitocybe_subditopoda Clitopilus_prunulus Collybia_tuberosa Conocybe_lactea Coprinopsis_atramentaria Coprinus_comatus Cortinarius_iodes Crepidotus_cf_applanatus Cyathus_striatus Entoloma_prunuloides Fistulina_antarctica Flammula_alnicola Flammulina_velutipes Galerina_semilanceata Gymnopus_contrarius Gymnopus_dryophilus Hebeloma_velutipes Hemimycena_gracilis Henningsomyces_candidus Hydropus_cf_scabripes Hygrocybe_aff_conica Hygrocybe_coccinea Hygrophorus_auratocephalus Hygrophorus_pudorinus Infundibulicybe_gibba Inocybe_dulcamara Kuehneromyces_rostratus Laccaria_amethystina Lachnella_villosa Lepista_irina Leucoagaricus_sinicus Limnoperdon_incarnatum Lycoperdon_pyriforme Lyophyllum_decastes Macrocystidia_cucumis Macrolepiota_dolichaula Marasmius_alliaceus Marasmius_rotula Megacollybia_platyphylla Melanoleuca_verrucipes Moniliophthora_perniciosa Mycena_amabilissima Mycena_aurantiidisca Mycena_plumbea Mythicomyces_corneipes Nolanea_sericea Phaeocollybia_festiva Phaeomarasmius_proximans Phyllotopsis_sp Physalacria_bambusae Pleuroflammula_flammea Pleurotus_ostreatus Plicaturopsis_crispa Pluteus_albostipitatus_AJ154 Pluteus_atromarginatus_AJ75 Pluteus_cervinus_AJ82 Pluteus_chrysophlebius_AJ45 Pluteus_cinereofuscus_AJ34 Pluteus_ephebeus_AJ234 Pluteus_granulatus_AJ203 Pluteus_heteromarginatus_AJ172 Pluteus_mammillatus_ Pluteus_pallescens_AJ214 Pluteus_petasatus_AJ201 Pluteus_phlebophorus_AJ81 Pluteus_podospileus_AJ204 Pluteus_romellii_AJ232 Pluteus_salicinus_MA67874 Pluteus_umbrosus_AJ213 Pseudoarmillariella_ectypoides Pterula_echo Resupinatus_alboniger Rhodocollybia_maculata Rhodocybe_mundula Sarcomyxa_serotina Schizophyllum_radiatum Simocybe_serrulata Stropharia_ambigua Tephrocybe_boudieri Termitomyces_sp Tricholoma_saponaceum Tricholomopsis_decora Tubaria_vinicolor Typhula_phacorrhiza Volvariella_bombycina_AJ244 Volvariella_caesiotincta_MA_54717 Volvariella_lepiotospora_AJ155 Volvariella_surrecta_AJ55 Volvariella_taylorii_AJ54 Volvariella_volvacea Volvopluteus_earlei_MA22816 Volvopluteus_gloiocephalus Xeromphalina_campanella Xerula_radicata ; END; BEGIN TREES; TITLE ribosomal_genes_Agaricales_Consensus_Majrule_TB; LINK TAXA = TaxaForAnalysisStep6131; TREE 'Agaricales_ribosomal' = [&R] (Athelia_rolfsii,Plicaturopsis_crispa,(((((((((((((Agaricus_bisporus,Lycoperdon_pyriforme),(Leucoagaricus_sinicus,Macrolepiota_dolichaula)),Coprinus_comatus),(((Crepidotus_cf_applanatus,Simocybe_serrulata),Inocybe_dulcamara),Pleuroflammula_flammea)),(Lyophyllum_decastes,Phaeocollybia_festiva)),Galerina_semilanceata),(((Bolbitius_vitellinus,Conocybe_lactea),Tubaria_vinicolor),Phaeomarasmius_proximans)),(((Agrocybe_praecox,Stropharia_ambigua),(Flammula_alnicola,Kuehneromyces_rostratus)),Hebeloma_velutipes)),((((Coprinopsis_atramentaria,Pleurotus_ostreatus),Cyathus_striatus),Mythicomyces_corneipes),(Cortinarius_iodes,Laccaria_amethystina))),((((((((((Amanita_brunnescens,Amanita_muscaria),Resupinatus_alboniger),(Baeospora_myosura,Hemimycena_gracilis)),(((Cheimonophyllum_candidissimum,Chondrostereum_purpureum),(Henningsomyces_candidus,Megacollybia_platyphylla)),(Hydropus_cf_scabripes,(Mycena_amabilissima,Mycena_aurantiidisca)))),(Callistosporium_graminicolor,Tricholomopsis_decora)),((((Anthracophyllum_archeri,((Gymnopus_dryophilus,Rhodocollybia_maculata),Marasmius_alliaceus)),Gymnopus_contrarius),(Marasmius_rotula,Moniliophthora_perniciosa)),((Armillaria_mellea,((Flammulina_velutipes,Physalacria_bambusae),Xerula_radicata)),((Camarophyllopsis_hymenocephala,(Clavaria_zollingeri,Clavulinopsis_laeticolor)),Lachnella_villosa)))),(Limnoperdon_incarnatum,(Melanoleuca_verrucipes,((Pluteus_atromarginatus_AJ75,((Pluteus_cervinus_AJ82,Pluteus_petasatus_AJ201),(Pluteus_salicinus_MA67874,Pluteus_albostipitatus_AJ154))),(((((((Pluteus_chrysophlebius_AJ45,Pluteus_phlebophorus_AJ81),(Pluteus_ephebeus_AJ234,Pluteus_mammillatus_)),Pluteus_romellii_AJ232),Pluteus_podospileus_AJ204),(Pluteus_cinereofuscus_AJ34,Pluteus_pallescens_AJ214)),((Pluteus_granulatus_AJ203,Pluteus_heteromarginatus_AJ172),Pluteus_umbrosus_AJ213)),(Volvopluteus_earlei_MA22816,Volvopluteus_gloiocephalus)))))),(Infundibulicybe_gibba,Macrocystidia_cucumis)),((Chrysomphalina_grossula,Hygrophorus_pudorinus),((Clitopilus_prunulus,Rhodocybe_mundula),(Entoloma_prunuloides,Nolanea_sericea)))),((((Asterophora_lycoperdoides,(Tephrocybe_boudieri,Termitomyces_sp)),(Clitocybe_candicans,Clitocybe_subditopoda)),(Clitocybe_nebularis,(Collybia_tuberosa,Lepista_irina))),Tricholoma_saponaceum),(Catathelasma_ventricosum,Mycena_plumbea),((((Phyllotopsis_sp,Pterula_echo),Typhula_phacorrhiza),Xeromphalina_campanella),Sarcomyxa_serotina))),(Camarophyllus_basidiosus,(Cantharocybe_gruberi,((Fistulina_antarctica,Schizophyllum_radiatum),((Volvariella_bombycina_AJ244,Volvariella_volvacea),(((Volvariella_caesiotincta_MA_54717,Volvariella_taylorii_AJ54),Volvariella_lepiotospora_AJ155),Volvariella_surrecta_AJ55)))))),((Hygrocybe_aff_conica,Hygrocybe_coccinea),Hygrophorus_auratocephalus)),(Ampulloclitocybe_clavipes,Pseudoarmillariella_ectypoides))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr9846] END;