#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 03, 2024; 23:33 GMT

TreeBASE (cc) 1994-2008

Study reference:
Spooner D.M., Ruess H.M., Iorizzo M., Senalik D., & Simon P.W. 2017. Entire Plastid
Phylogeny of the Carrot Genus (Daucus, Apiaceae); Concordance to Nuclear Data
and Mitochondrial and Nuclear DNA Transfer to the Plastid. American Journal of
Botany, 104(2): 296-312.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S19872]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=38;
        TAXLABELS
            Caucalis_platycarpos_649446
            Daucus_aureus_319403
            Daucus_bicolor_652321
            Daucus_bicolor_Ames_25830
            Daucus_carota_subsp._capillifolius_279764
            Daucus_carota_subsp._carota_274297
            Daucus_carota_subsp._carota_502244
            Daucus_carota_subsp._carota_652393
            Daucus_carota_subsp._carota_Ames_27395
            Daucus_carota_subsp._gummifer_478883
            Daucus_carota_subsp._gummifer_Ames_26381
            Daucus_carota_subsp._gummifer_Ames_26383
            Daucus_carota_subsp._gummifer_Ames_31194
            Daucus_carota_subsp._maximus_Ames_26408
            Daucus_carota_subsp._sativus_NC008325.1
            Daucus_conchitae_652367
            Daucus_conchitae_652375
            Daucus_conchitae_652385
            Daucus_crinitus_652412
            Daucus_crinitus_652413
            Daucus_glochidiatus_285038
            Daucus_guttatus_286611
            Daucus_guttatus_652233
            Daucus_involucratus_652332
            Daucus_involucratus_652350
            Daucus_littoralis_295857
            Daucus_muricatus_295863
            Daucus_muricatus_Ames_29090
            Daucus_pusillus_349267
            Daucus_pusillus_661242
            Daucus_setulosus_652329
            Daucus_setulosus_652360
            Daucus_syrticus_Ames_29096
            Daucus_syrticus_Ames_29108
            Daucus_tenuisectus_Ames_31616
            Oenanthe_virgata_Ames_30293
            Pseudorlaya_pumila_662301
            Rouya_polygama__674284
            ;
END;

BEGIN TREES;
      TITLE Daucus_Plastid_MPTs;
      LINK TAXA = Taxa;
      TREE 'PAUP_14' = [&R] (Oenanthe_virgata_Ames_30293,(Caucalis_platycarpos_649446,((Daucus_glochidiatus_285038,((Daucus_littoralis_295857,(Daucus_guttatus_286611,Daucus_guttatus_652233)),((Daucus_pusillus_349267,Daucus_pusillus_661242),((Daucus_setulosus_652329,Daucus_setulosus_652360),((Daucus_bicolor_Ames_25830,(Daucus_bicolor_652321,Daucus_conchitae_652385)),((Daucus_conchitae_652367,Daucus_conchitae_652375),(Daucus_involucratus_652332,Daucus_involucratus_652350))))))),((Daucus_crinitus_652412,Daucus_crinitus_652413),((Daucus_aureus_319403,(Daucus_tenuisectus_Ames_31616,(Daucus_muricatus_295863,Daucus_muricatus_Ames_29090))),(Rouya_polygama__674284,(Pseudorlaya_pumila_662301,(Daucus_carota_subsp._gummifer_478883,((Daucus_carota_subsp._carota_Ames_27395,(Daucus_carota_subsp._maximus_Ames_26408,Daucus_carota_subsp._gummifer_Ames_26383)),((Daucus_carota_subsp._gummifer_Ames_26381,Daucus_syrticus_Ames_29096),((Daucus_carota_subsp._capillifolius_279764,(Daucus_carota_subsp._carota_274297,Daucus_carota_subsp._gummifer_Ames_31194)),(Daucus_carota_subsp._carota_652393,(Daucus_syrticus_Ames_29108,(Daucus_carota_subsp._sativus_NC008325.1,Daucus_carota_subsp._carota_502244))))))))))))));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr98485]


END;