#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 11, 2024; 20:15 GMT TreeBASE (cc) 1994-2008 Study reference: Nagy L., Walther G., Házi J., Vágvölgyi C., & Papp T. 2010. Understanding the Evolutionary Processes of Fungal Fruiting Bodies: Correlated Evolution and Divergence Times in the Psathyrellaceae. Systematic Biology, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S10613] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=125; TAXLABELS Agrocybe_pediades_DQ484057 Agrocybe_praecox_AY194531 Bolbitius_vitellinus_AY194519 Bolbitius_vitellinus_DQ200920 Conocybe_lactea_DQ486693 Coprinellus_aureogranulatus_CBS973.95 Coprinellus_bisporus_161 Coprinellus_brevisetulosus_101 Coprinellus_callinus_158 Coprinellus_congregatus_100 Coprinellus_curtus_75 Coprinellus_disseminatus_71 Coprinellus_flocculosus_214 Coprinellus_flocculosus_215 Coprinellus_hiascens_88 Coprinellus_impatiens Coprinellus_pellucidus_85 Coprinellus_pusillulus_68 Coprinellus_sassii_150 Coprinellus_subpurpureus_102 Coprinellus_verrucispermus_66 Coprinellus_xanthothrix_151 Coprinopsis_atramentaria_188 Coprinopsis_calospora_CBS612.91 Coprinopsis_candidolanata_84 Coprinopsis_cinerea_69_241 Coprinopsis_episcopalis_173 Coprinopsis_erythrocephala_191 Coprinopsis_friesii_80 Coprinopsis_gonophylla_70 Coprinopsis_goudensis_195 Coprinopsis_insignis_190 Coprinopsis_jonesii_171 Coprinopsis_krieglsteineri_86 Coprinopsis_laanii_CBS476.70 Coprinopsis_lagopus_193 Coprinopsis_lagopus_74 Coprinopsis_macrocephala_192 Coprinopsis_mitraesporus_172 Coprinopsis_narcotica_90 Coprinopsis_picacea_170 Coprinopsis_picacea_174 Coprinopsis_pseudonivea_72 Coprinopsis_sclerotiger_CBS596.80 Coprinopsis_semitalis Coprinopsis_sp._I_ITS4_160 Coprinopsis_squamosus_65 Coprinopsis_stangliana_89 Coprinopsis_stercorea_77 Coprinopsis_truncorum_143 Coprinopsis_truncorum_149 Coprinopsis_vacillans_78 Coprinopsis_vermiculifer_CBS132.46 Coprinus_bellulus_76 Coprinus_coniophorus_186 Coprinus_cortinatus_187 Coprinus_patouillardi_39 Coprinus_patouillardi_40 Coprinus_patouillardi_41 Coprinus_patouillardi_42 Coprinus_poliomallus_73 Coprinus_utrifer_246 Lacrymaria_pyrotricha Lacrymaria_velutina_108 Mythicomyces_corneipes_DQ404393 Parasola_auricoma_35 Parasola_conopilus_36 Parasola_leiocephala_32 Parasola_leiocephala_49 Parasola_leiocephala_57_122 Parasola_lilatincta_16 Parasola_megasperma_129 Parasola_megasperma_24 Parasola_misera_50 Parasola_plicatilis_185 Parasola_plicatilis_34 Parasola_plicatilis_38 Parasola_plicatilis_5 Psathyrella_ammophila_165 Psathyrella_ammophila_166 Psathyrella_ammophila_99 Psathyrella_badiophylla_87 Psathyrella_bipellis_162 Psathyrella_bipellis_92 Psathyrella_calcarea_81 Psathyrella_candolleana_169 Psathyrella_clivensis_103 Psathyrella_corrugis_292 Psathyrella_fagetophila_137 Psathyrella_fatua_288 Psathyrella_fibrillosa_200 Psathyrella_fusca_104 Psathyrella_leucotephra_106 Psathyrella_maculata_CBS206.33 Psathyrella_magnispora_105 Psathyrella_marcescibilis_93 Psathyrella_marcescibilis_94 Psathyrella_microrhiza_197 Psathyrella_multipedata_CBS121189 'Psathyrella noli-tangere 290' Psathyrella_olympiana_156 Psathyrella_panaeoloides_91 Psathyrella_pertinax_97 Psathyrella_pervelata_110 Psathyrella_phegophila_196 Psathyrella_piluliformis_168 Psathyrella_piluliformis_206 Psathyrella_polycystis_109 Psathyrella_prona_264 Psathyrella_pseudogracilis_79 Psathyrella_pygmaea_142 Psathyrella_pygmaea_95 Psathyrella_reticulata_148 Psathyrella_romelli_205 Psathyrella_rufopruinatus_157 Psathyrella_sacchariolens_201 Psathyrella_senex_175 Psathyrella_sp_289 Psathyrella_sp_96 Psathyrella_spadicea_141 Psathyrella_spadicea_199 Psathyrella_spadicea_204 Psathyrella_sylvestris_198 Psathyrella_umbrina_147 Psathyrella_vestita_83 ; END; BEGIN TREES; TITLE 4_genes_DNA_and_Indels; LINK TAXA = Taxa; TREE con_50_majrule = [&R] (((Agrocybe_praecox_AY194531:0.055275,Agrocybe_pediades_DQ484057:0.078568)1.00:0.255753,(Conocybe_lactea_DQ486693:0.589366,(Bolbitius_vitellinus_AY194519:0.021681,Bolbitius_vitellinus_DQ200920:0.021245):0.391297)1.00:0.105395)0.99:0.06459715,(Mythicomyces_corneipes_DQ404393:0.534662,((((Psathyrella_spadicea_199:0.004993,Psathyrella_spadicea_204:0.01296)1.00:0.093423,(Lacrymaria_velutina_108:0.027772,Lacrymaria_pyrotricha:0.027459)1.00:0.083273)1.00:0.128108,((((((((((Psathyrella_fibrillosa_200:0.186351,(Psathyrella_umbrina_147:0.119716,Psathyrella_sacchariolens_201:0.147646)1.00:0.042461)1.00:0.035499,Psathyrella_fagetophila_137:0.141933)0.70:0.024696,(Psathyrella_maculata_CBS206.33:0.047594,(Psathyrella_pertinax_97:0.015789,(Psathyrella_piluliformis_206:0.004624,Psathyrella_piluliformis_168:0.010371)1.00:0.035763)0.73:0.016201)1.00:0.090645)0.98:0.027656,((((('Psathyrella noli-tangere 290':0.09166,Psathyrella_reticulata_148:0.082254)0.97:0.016085,Psathyrella_panaeoloides_91:0.083091)0.66:0.010156,Psathyrella_fusca_104:0.086183)0.98:0.020921,(Psathyrella_olympiana_156:0.27597,(Psathyrella_pygmaea_95:0.003362,Psathyrella_pygmaea_142:0.006187)1.00:0.071967)1.00:0.056984)1.00:0.075801,((Coprinus_patouillardi_42:0.020025,Coprinus_patouillardi_39:0.026448)1.00:0.05179,(Coprinus_patouillardi_41:0.004305,Coprinus_patouillardi_40:0.003552)1.00:0.073939)1.00:0.229755)1.00:0.036751)0.60:0.012223,(Psathyrella_vestita_83:0.013936,Psathyrella_pervelata_110:0.043808)1.00:0.4021)1.00:0.042036,((((((Psathyrella_magnispora_105:0.024154,(Psathyrella_ammophila_166:0.005026,Psathyrella_ammophila_99:0.005914)0.99:0.008059)0.99:0.008375,Psathyrella_ammophila_165:0.01901)1.00:0.044298,Psathyrella_fatua_288:0.037549)1.00:0.015802,Psathyrella_spadicea_141:0.031162)1.00:0.010644,(Psathyrella_phegophila_196:0.05117,Psathyrella_clivensis_103:0.042491)1.00:0.021886)1.00:0.075052,((Psathyrella_prona_264:0.040875,Psathyrella_microrhiza_197:0.060962)0.95:0.014502,Psathyrella_senex_175:0.094015)1.00:0.017969)0.60:0.019278)1.00:0.032769,(Psathyrella_calcarea_81:0.097942,((Psathyrella_pseudogracilis_79:0.025636,Psathyrella_polycystis_109:0.037601)1.00:0.045568,(Psathyrella_corrugis_292:0.041815,((Psathyrella_bipellis_92:0.006961,Psathyrella_bipellis_162:0.002383)1.00:0.079685,(Psathyrella_romelli_205:0.078677,Psathyrella_sp_96:0.17134)0.99:0.037424)1.00:0.028892)0.85:0.00953)1.00:0.021089)0.93:0.015958)0.87:0.022549,((((((Coprinellus_congregatus_100:0.112331,Coprinellus_bisporus_161:0.110515)1.00:0.026606,Coprinellus_callinus_158:0.04124)1.00:0.024583,Coprinellus_sassii_150:0.044931)0.84:0.0122,((Coprinellus_brevisetulosus_101:0.088386,Coprinellus_pellucidus_85:0.075212)1.00:0.070111,(Coprinellus_hiascens_88:0.079785,Coprinellus_subpurpureus_102:0.028611)0.97:0.015811)0.55:0.010039)0.73:0.019946,Coprinellus_impatiens:0.063721)1.00:0.083859,Psathyrella_multipedata_CBS121189:0.124523)1.00:0.032932)1.00:0.064399,(((((Coprinellus_pusillulus_68:0.095772,Coprinellus_curtus_75:0.022984)1.00:0.05728,(Coprinellus_flocculosus_214:0.044723,Coprinellus_flocculosus_215:0.029352)1.00:0.084192)0.73:0.010069,((Coprinellus_disseminatus_71:0.138696,((Coprinopsis_truncorum_149:0.004518,Coprinopsis_truncorum_143:0.021207)1.00:0.050738,Psathyrella_rufopruinatus_157:0.047222)1.00:0.021683)0.87:0.022082,(Coprinellus_aureogranulatus_CBS973.95:0.12047,Coprinellus_xanthothrix_151:0.066974)0.87:0.021362)0.99:0.018424)1.00:0.046059,Coprinellus_verrucispermus_66:0.105401)1.00:0.098188,((Psathyrella_candolleana_169:0.029633,Psathyrella_leucotephra_106:0.027834)0.96:0.011238,Psathyrella_badiophylla_87:0.054343)1.00:0.110987)1.00:0.036772)0.99:0.052837,Psathyrella_sylvestris_198:0.397581)1.00:0.126278)0.57:0.039436,((((Psathyrella_sp_289:0.321014,(Coprinopsis_pseudonivea_72:0.243373,(((Coprinus_cortinatus_187:0.111273,Coprinus_bellulus_76:0.114797)1.00:0.037795,Coprinus_coniophorus_186:0.16707)0.95:0.038145,Coprinus_utrifer_246:0.112388)1.00:0.145235)1.00:0.047305)0.96:0.031065,(Psathyrella_marcescibilis_93:0.05242,Psathyrella_marcescibilis_94:0.050524)1.00:0.15929)1.00:0.084398,((((((Coprinus_poliomallus_73:0.131563,(Coprinopsis_stercorea_77:0.196532,((Coprinopsis_sclerotiger_CBS596.80:0.116837,Coprinopsis_laanii_CBS476.70:0.105365)0.98:0.022576,(Coprinopsis_narcotica_90:0.012811,Coprinopsis_semitalis:0.001806)1.00:0.072876)1.00:0.102442)0.88:0.060281)1.00:0.042206,(Coprinopsis_calospora_CBS612.91:0.184476,Coprinopsis_mitraesporus_172:0.158292)0.97:0.025287)1.00:0.04237,((Coprinopsis_insignis_190:0.125764,Coprinopsis_cinerea_69_241:0.069346)1.00:0.07054,(Coprinopsis_erythrocephala_191:0.103345,(Coprinopsis_krieglsteineri_86:0.112205,(Coprinopsis_squamosus_65:0.062253,Coprinopsis_atramentaria_188:0.059482)1.00:0.145315)1.00:0.063583)0.99:0.036969)0.95:0.032196)0.55:0.015334,((((Coprinopsis_vacillans_78:0.026794,Coprinopsis_lagopus_74:0.032308)1.00:0.064861,((Coprinopsis_sp._I_ITS4_160:0.059117,Coprinopsis_lagopus_193:0.053526)0.88:0.031464,Coprinopsis_jonesii_171:0.066287)0.50:0.038901)1.00:0.050501,(Coprinopsis_macrocephala_192:0.092455,Coprinopsis_goudensis_195:0.11585)0.72:0.021811)1.00:0.036859,Coprinopsis_candidolanata_84:0.141793)1.00:0.048361)0.68:0.023955,(((Coprinopsis_gonophylla_70:0.032224,Coprinopsis_episcopalis_173:0.079233)0.70:0.037165,Coprinopsis_friesii_80:0.100041)1.00:0.182974,Coprinopsis_vermiculifer_CBS132.46:0.150061)1.00:0.037445)1.00:0.038247,(Coprinopsis_stangliana_89:0.163277,(Coprinopsis_picacea_170:0.001965,Coprinopsis_picacea_174:0.006938)1.00:0.092414)1.00:0.085444)1.00:0.062223)1.00:0.106953,(((((((Parasola_plicatilis_185:0.02814,Parasola_plicatilis_5:0.023361)0.53:0.007757,Parasola_plicatilis_34:0.004708)1.00:0.067951,Parasola_plicatilis_38:0.064783)1.00:0.038654,(Parasola_megasperma_129:0.006903,Parasola_megasperma_24:0.025774)1.00:0.034579)1.00:0.019028,((Parasola_leiocephala_49:0.008373,Parasola_leiocephala_57_122:0.006577)0.76:0.004519,Parasola_leiocephala_32:0.006613)1.00:0.059457)0.99:0.014236,(Parasola_misera_50:0.11319,Parasola_lilatincta_16:0.127893)1.00:0.02138)1.00:0.092015,(Parasola_conopilus_36:0.181734,Parasola_auricoma_35:0.129465)0.98:0.040885)1.00:0.260832)1.00:0.069425)1.00:0.290424)0.98:0.00339985); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr9870] END;