Aleksandra Shumkoska
Anton Bivolarov
Francesco Vitali
Giovanni Bacci
Maria Traka
Pance Panov
Pance Panov (JSI)
17 ЈAN 2023
Microbiome module of FNS-H
FNS_H
english
FNS-Harmony Ontology
1.2
1.3
isMandatory
possible_attribute_values
related_external_ontology_class
related_external_ontology_class_label
related_external_class_ontology_ID
Allows reference to a resource
Pance Panov (JSI)
has-resouce-reference
Pance Panov (JSI)
has-organism
Pance Panov (JSI)
has-attribute
Pance Panov (JSI)
has-spot-descriptor
Pance Panov (JSI)
has_platform
Pance Panov (JSI)
has-library
Pance Panov (JSI)
referes-to
SAMPLE_REF_PRIMARY_ID
The reference to the sample
Pance Panov (JSI)
has-primary-sample-ref
A reference to the additional sample id
SAMPLE_REF_EXTERNAL_ID
Pance Panov (JSI)
has-external-sample-ref
Pance Panov (JSI)
part-of
Pance Panov (JSI)
produces-output-file
has-part
Information about date and time of the submission to the FNS Cloud
SUBMITTED_AT
Pance Panov (JSI)
study-submitted-on
Information about the source database
SOURCE
Pance Panov (JSI)
has-source-information
Unique identification key in the source database
RESOURCE_ID
Pance Panov (JSI)
has-resource-ID
Additional identification key
SOURCE_SECONDARY_ID
Pance Panov (JSI)
has-study-source-secondaryID
Identification ID of the submitters
RESOURCE_SUBMITTER_ID
Pance Panov (JSI)
has-resource-submitterID
The title of the study
STUDY_TITLE
Pance Panov (JSI)
has-study-title
Provides Contact Information
CONTACT_INFORMATION
Pance Panov (JSI)
has-study-contact-information
Resource name e.g. PubMed, ENA-STUDY, etc.
RESOURCE
Pance Panov (JSI)
has-resource-name
The ID of the Resource
ID
Pance Panov (JSI)
has-resource-reference-ID
Pance Panov (JSI)
sample-submitted-on
Pance Panov (JSI)
has-sample-alias
Pance Panov (JSI)
has-sample-title
Taxon ID based on NCIB Taxon Database
TAXON_ID
Pance Panov (JSI)
has-taxon-ID
Scientific name of the organism
SCIENTIFIC_NAME
Pance Panov (JSI)
has-taxon-scientific-name
Common name of the organism
COMMON_NAME
Pance Panov (JSI)
has-taxon-common-name
Attribute name
KEY
Pance Panov (JSI)
has-attribute-key
Attribute value
VALUE
Pance Panov (JSI)
has-attribute-value
The index of the read e.g. 0,1,2, etc
READ_INDEX
Pance Panov (JSI)
has-read-index
Read Identification Information e.g. Forward, Left Adapter, etc.
READ_LABEL
Pance Panov (JSI)
has-read-label
Read Identification Information e.g. Forward, Left Adapter, etc.
READ_LABEL
Pance Panov (JSI)
has-class-label
READ_TYPE
The type of the read e.g. Forward, Adapter, BarCode, etc.
Pance Panov (JSI)
has-read-type
Information about the instument model used e.g. Illumina MiSeq
INSTRUMENT_MODEL
Pance Panov (JSI)
has_instrument_model
The name of the library used
LIBRARY_NAME
Pance Panov (JSI)
has-library-name
Information about the applied strategy
LIBRARY_STRATEGY
Pance Panov (JSI)
has_library_strategy
Library source information
LIBRARY_SOURCE
Pance Panov (JSI)
has_library_source
Library selection information
LIBRARY_SELECTION
Pance Panov (JSI)
has_library_selection
Additional information about the experiment
TITLE
Pance Panov (JSI)
has-experiment-title
Alias of the experiment in the study
EXPERIMENT_ALIAS
Pance Panov (JSI)
has-experiment-alias
Pance Panov (JSI)
experiment-submitted-on
Pance Panov (JSI)
SUBMITTED_AT
submitted-at
Pance Panov (JSI)
has-title
Pance Panov (JSI)
has-ID
EXPERIMENT_ALIAS
RUN_ALIAS
SAMPLE_ALIAS
Pance Panov (JSI)
has-alias
The checksum of the file produced
FILE_CHECKSUM
Pance Panov (JSI)
has-file-checksum
The checksum method used
FILE_CHECKSUM_METHOD
Pance Panov (JSI)
has-file-checksum-method
Identification of the file
FILE_NAME
Pance Panov (JSI)
has-file-name
The type of the file e.g. fastq, sff, etc.
FILE_TYPE
Pance Panov (JSI)
has-file-type
Encoding of the file e.g. ascii, etc.
FILE_QUALITY_ENCODING
Pance Panov (JSI)
has-file-quality-encoding
Quality encoding scoring system
FILE_QUALITY_SCORING_SYSTEM
Pance Panov (JSI)
has-file-quality-scoring-system
Additional information about the run
TITLE
Pance Panov (JSI)
has-run-title
Alias of the run in the study
RUN_ALIAS
Pance Panov (JSI)
has-run-alias
Pance Panov (JSI)
run-submitted-on
Pance Panov (JSI)
has-name
BFO: independent continuant
DOID:disease
ENVO:enviromental_material
OBI:material_processing
ONS:diet
UBERON: anatomical entity
UO:mass unit
UO:temperature unit
1
1
1
Pance Panov (JSI)
study
SUBMITTED-AT
1
STUDY_TITLE
1
1
1
1
Pance Panov (JSI)
sample
SAMPLE_ALIAS
SUBMITTED-AT
http://purl.org/dc/elements/1.1/title
TITLE
1
1
Pance Panov (JSI)
experiment
TITLE
EXPERIMENT_ALIAS
http://purl.org/dc/elements/1.1/date
SUBMITTED-AT
1
1
Pance Panov (JSI)
run
RUN_ALIAS
SUBMITTED-AT
TITLE
Pance Panov (JSI)
study_type
1
1
Pance Panov (JSI)
resource_reference
1
RESOURCE
1
1
Pance Panov (JSI)
organism
Pance Panov (JSI)
attribute
SPOT_DESCRIPTOR
Pance Panov (JSI)
spot_descriptor
Pance Panov (JSI)
platform
Pance Panov (JSI)
library
LIBRARY_NAME
Pance Panov (JSI)
file
FILE_NAME
general_sample_attribute
maybe better to retain the values specified from ENA checklist, but OBI mapping could be useful
investigation_type
"""bacteria_archaea"",
""eukaryote"",
""metagenome"",
""metagenome-assembled genome"",
""metatranscriptome"", ""mimarks-specimen"",
""mimarks-survey"",
""organelle"",
""plasmid"",
""single amplified enome"",
""uncultivated viral genomes"",
""virus"""
sequencing assey
Reference to online paper, etc.
Giovanni: This could be optional. Most users will upload sequence files first and then submit the work for consideration in peer reviewed journals so this field could not be specified during the submission process.
electronic_resource
sampling_sample_attribute
The method or device employed for collecting the sample.
free text
sample_collection_device
"tube", "syringe", "core", "spatula", "portion of sample", "biopsy", "other"
Any processing applied to the sample during or after retrieving the sample from environment. This field accepts OBI terms
Ontology-restricted text
sample_material_processing
material processing
Link to a literature reference, electronic resource or a standard operating procedure (SOP), that describes the material separation to recover the nucleic acid fraction from a sample
PMID, DOI, URL
nucleid_acid_extraction
1
Temperature at which sample was stored, e.g. -80
integer+unit
sample_storage_temperature
Date of the sample collection.
date and time - timestamp
collection_date
material_sample_attribute
Biome is a general environment descriptor of the broad ecological context of a sample.
Ontology-restricted text
all children terms can be used as values
enviroment_biome
independent contiuant
Local is the local environment descriptor of the ecological context of a sample.
Ontology-restricted text
all children terms can be used as values
enviroment_local
Medium refers to the material that was displaced by the sample, or material in which a sample was embedded, prior to the sampling event
Ontology-restricted text
all children terms can be used as values
enviroment_medium
independent continuant
Substance produced by the body, e.g. stool, mucus, where the sample was obtained from.
host_body_product
enviromental material
Description of relationship(s) between the subject organism and other organism(s) it is associated with. E.g., parasite on species X; mutualist with species Y
could be useful to easily distinguish between host associated studies (i.e. microbiota of human gut) respect to food security studies (i.e. microbiota of a cheese)
difficult to find a single ontology, better to use the fixed list
biotic_relationship
"commensal", “host associated”, "free living", "mutualism", "parasite", "symbiont"
The host taxid, if host is involved
NCBITaxon is really huge, but I can’tfind the simple taxid number
Ontology-restricted text
specific_host
sequencing_sample_attribute
Targeted gene or locus name for marker gene studies.
Ontology-restricted text
can’t find an ontology with all the possible genes locus. At best, we could use a restricted list
target_gene
Name of subfragment of a gene or locus. Important to e.g. identify special regions on marker genes like V6 on 16S rRNA
target_subfragment
“V1”, “V2”,“V3”,“V4”,“V5”,“V6”,“V7”,“V8”,“V9”,“ITS1”,“ITS2”,“5.8S”, “none of the above” or combination of those
PCR primers that were used to amplify the sequence of the targeted gene, locus or subfragment.
forward or reverse primer sequencing
here we could make some check for compliance with the convention for DNA, so it’s not really ree text. Example FWD: dna, REV: dna
pcr_primers
Sequencing method used; e.g. Sanger, pyrosequencing, ABI-solid
sequencing_method
[MinION|GridION|PromethION|454 GS|454 GS 20|454 GS FLX|454 GS FLX+|454 GS FLX Titanium|454 GS Junior|Illumina Genome Analyzer|Illumina Genome Analyzer II|Illumina Genome Analyzer IIx|Illumina HiSeq 4000|Illumina HiSeq 3000|Illumina HiSeq 2500|Illumina HiSeq 2000|Illumina HiSeq 1500|Illumina HiSeq 1000|Illumina HiScanSQ|Illumina MiSeq|Illumina HiSeq X Five|Illumina HiSeq X Ten|Illumina NextSeq 500|Illumina NextSeq 550|AB SOLiD System|AB SOLiD System 2.0|AB SOLiD System 3.0|AB SOLiD 3 Plus System|AB SOLiD 4 System|AB SOLiD 4hq System|AB SOLiD PI System|AB 5500 Genetic Analyzer|AB 5500xl Genetic Analyzer|AB 5500xl-W Genetic Analysis System|Ion Torrent PGM|Ion Torrent Proton|Ion Torrent S5|Ion Torrent S5 XL|PacBio RS|PacBio RS II|Sequel|AB 3730xL Genetic Analyzer|AB 3730 Genetic Analyzer|AB 3500xL Genetic Analyzer|AB 3500 Genetic Analyzer|AB 3130xL Genetic Analyzer|AB 3130 Genetic Analyzer|AB 310 Genetic Analyzer|BGISEQ-500]
host_sample_attribute
Health or disease status of specific host at time of collection
general classification here, would use the fixed list
health_status
healthy, diseased,dead, disease-free, undetermined, recovering, resolving, pre-existing condition, pathological, life threatening, congenital
List of diseases with which the host has been diagnosed; can include multiple diagnoses.
the pity here is that I could not find DO in Ontobee or OLS, but seems equivalent to the DOID ontology that is in ontobee or OLS. Here the aim is to specify the class above
host_disease_status
Ontology-restricted text
Disease
Gender or sex of the host.
sex
Age of host at the time of sampling; relevant scale depends on species and study, e.g. could be seconds for amoebae or centuries for trees
integer, accepting also “not provided” or “not applicable”
host_age
Name of body site where the sample was obtained from, such as a specific organ or tissue (tongue, lung etc...).
Ontology-restricted text
host_body_site
anatomical entity
Body mass index, calculated as weight/(height)squared.
float, accepting also “not provided” or “not applicable”
host_bodymass_index
1
Total mass of the host at collection, the unit depends on host
float + unit; accepting also “not provided” or “not applicable”
host_total_mass
Type of diet depending on the host, for animals omnivore, herbivore etc., for humans high-fat, Mediterranean etc.; can include multiple diet types
host_diet
diet
specification of special diet; can include multiple special diets
special_diet
diet
Observed genotype
free text
in case of animal studies, in addition to the taxid, would useful to have the strain (i.e. F344, wistar). Could not find an ontology for that (which by itself is a gap…)
host_genotype
'wildtype', 'not provided', 'not applicable', 'homo sapiens',
'129 Mice', '129-Elite (SOPF) Mouse', 'AKR Mouse', 'Athymic Heterozygous Mouse (Athymic HE)', 'Athymic Nude Mouse',
'B10.A/Cr Mouse', 'B6 Albino Mouse', 'B6C3F1 Mouse', 'B6CBAF1 Mouse', 'B6CBAF1/J (JAX™ Mice Strain)',
'B6D2F1 (BDF1) Mouse', 'B6D2F1/J (JAX™ Mice Strain)', 'BALB/c Heterozygous Mouse (NU+ B/c; NU+ BALB/c)', 'BALB/c Mice',
'BALB/c Nude (JAX™ Mice Strain)', 'BALB/c Nude Mouse', 'BALB/c-Elite Mouse', 'BALB/cByJ (JAX™ Mice Strain)', 'BALB/cByJ SOPF (JAX™ Mice Strain)', 'BDIX Rat',
'Black Swiss Mouse', 'Brown Norway Rat', 'Buffalo Rat', 'C3H Mice', 'C3H SOPF Mouse','C3H/HeOuJ (JAX™ Mice Strain)',
'C57BL/6 Mouse', 'C57BL/6-Aged Mouse', 'C57BL/6-Elite (SOPF) Mouse', 'C57BL/6-Germ-Free Mouse',
'C57BL/6J (JAX™ Mice Strain)', 'C57BL/6J SOPF (JAX™ Mice Strain)', 'CB6F1 Mouse', 'CBA Mouse', 'CBA/J (JAX™ Mice Strain)',
'CBAB6F1 Mouse', 'CD (SD) IGS SOPF Rat', 'CD Hairless Rat', 'CD-1® Heterozygous Mouse (NU+ CD-1®)', 'CD-1® IGS Mouse',
'CD-1® Nude Mouse', 'CD® (Sprague Dawley) IGS Rat', 'CD1-Elite (SOPF) Mouse', 'CD2F1 (CDF1) Mouse', 'CF-1™ Mouse','Copenhagen Rat',
'Dahl/Salt Sensitive Rat', 'DBA/1J (JAX™ Mice Strain)', 'DBA/2 Mouse', 'DBA/2J (JAX™ Mice Strain)',
'FHH Rat', 'Fischer (CDF) Rat', 'Fischer (SAS FISCH) Rat', 'Fox Chase CB17 Mouse', 'Fox Chase SCID Beige Mouse',
'Fox Chase SCID Mouse', 'FVB Mouse', 'Hartley Guinea Pig', 'JAX Mice Metabolic Models', 'K18-hACE2 (JAX™ Mice Strain)',
'Lewis Rat', 'Lister Hooded Rat', 'Long-Evans Rat', 'LVG Golden Syrian Hamster', 'Ly5.1 Mouse', 'Mongolian Gerbil',
'NCI A/JCR Mouse', 'NCI B6-Ly5.1/Cr Mouse', 'NCI SCID/NCr Mouse', 'New Zealand White Rabbit - CR',
'NIH-III Heterozygous Mouse (NIH-III-HE)', 'NIH-III Nude Mouse', 'NMRI Mouse', 'NMRI Nude Mouse', 'NMRI SOPF Mouse','Noble Rat',
'NOD SCID (JAX™ Mice Strain)', 'NOD SCID Mouse', 'NRG Mice (JAX™ Mice Strain)', 'NSG® Mice (JAX™ Mice Strain)',
'NU/NU Heterozygous Mouse (NU+)', 'NU/NU Nude Mouse', 'Obese Prone CD Rat', 'Obese Resistant CD Rat', 'OF1 Mouse', 'OT I Mouse',
'OT II Mouse', 'PCK Rat', 'PGP Mouse (P-glycoprotein Deficient)', 'RNU Heterozygous Rat (RNU+)',
'RNU Nude Rat', 'SAS Sprague Dawley Rat', 'SCID Hairless Congenic (SHC) Mouse', 'SCID Hairless Outbred (SHO®) Mouse', 'Sencar Mouse',
'Sentinel Mouse (Athymic HE)', 'Sentinel Mouse (NU HE)', 'Sentinel Rat (HET RNU)', 'SJL-Elite Mouse', 'SJL/J (JAX™ Mice Strain)',
'SKH1 Hairless Mouse', 'SKH1-Elite Mouse', 'Spontaneously Hypertensive (SHR) Rat', 'Spontaneously Hypertensive Heart Failure (SHHF) Rat (Lean +/?)',
'Spontaneously Hypertensive Heart Failure (SHHF) Rat (Obese cp/cp)', 'Spontaneously Hypertensive Obese (SHROB) Rat', 'Spontaneously Hypertensive Stroke Prone (SHRSP) Rat',
'SS-13BN Rat', 'Swiss Nude Mice', 'Swiss Webster (CFW) Mouse',
'THE POUND MOUSE', 'WAG Rat', 'Wistar Furth Rat', 'Wistar Han IGS Rat', 'Wistar IGS Rat', 'Wistar Kyoto (WKY) Rat',
'Wistar WU Rat', 'ZDF Rat (Lean +/?)', 'ZDF Rat (Lean fa/+)', 'ZDF Rat (Obese fa/fa)',
'ZDSD Rat', 'ZSF1 Rat (Lean)', 'ZSF1 Rat (Obese)', 'Zucker Rat', 'Zucker Rat (Lean)', 'Zucker Rat (Obese)'
Type of perturbation, e.g. chemical administration, physical disturbance, etc., coupled with time that perturbation occurred; can include multiple perturbation types
free text
perturbation
List of chemical compounds administered to the host or site where sampling occurred, and when (e.g. antibiotics, N fertilizer, air filter); can include multiple compounds.
free text or ontology restricted text from CHEBI, we would need to import all CHEBI terms
chemical_administration
The geographical origin of the sample as defined by the country or sea.
geo_location
"""Afghanistan"",
""Albania"",
""Algeria"",
""American Samoa"",
""Andorra"",
""Angola"",
""Anguilla"",
""Antarctica"",
""Antigua and Barbuda"",
""Arctic Ocean"",
""Argentina"",
""Armenia"",
""Aruba"",
""Ashmore and Cartier Islands"",
""Atlantic Ocean"",
""Australia"",
""Austria"",
""Azerbaijan"",
""Bahamas"",
""Bahrain"",
""Baker Island"",
""Baltic Sea"",
""Bangladesh"",
""Barbados"",
""Bassas da India"",
""Belarus"",
""Belgium"",
""Belize"",
""Benin"",
""Bermuda"",
""Bhutan"",
""Bolivia"",
""Borneo"",
""Bosnia and Herzegovina"",
""Botswana"",
""Bouvet Island"",
""Brazil"",
""British Virgin Islands"",
""Brunei"",
""Bulgaria"",
""Burkina Faso"",
""Burundi"",
""Cambodia"",
""Cameroon"",
""Canada"",
""Cape Verde"",
""Cayman Islands"",
""Central African Republic"",
""Chad"",
""Chile"",
""China"",
""Christmas Island"",
""Clipperton Island"",
""Cocos Islands"",
""Colombia"",
""Comoros"",
""Cook Islands"",
""Coral Sea Islands"",
""Costa Rica"",
""Cote d'Ivoire"",
""Croatia"",
""Cuba"",
""Curacao"",
""Cyprus"",
""Czech Republic"",
""Democratic Republic of the Congo"",
""Denmark"",
""Djibouti"",
""Dominica"",
""Dominican Republic"",
""East Timor"",
""Ecuador"",
""Egypt"",
""El Salvador"",
""Equatorial Guinea"",
""Eritrea"",
""Estonia"",
""Ethiopia"",
""Europa Island"",
""Falkland Islands (Islas Malvinas)"",
""Faroe Islands"",
""Fiji"",
""Finland"",
""France"",
""French Guiana"",
""French Polynesia"",
""French Southern and Antarctic Lands"",
""Gabon"",
""Gambia"",
""Gaza Strip"",
""Georgia"",
""Germany"",
""Ghana"",
""Gibraltar"",
""Glorioso Islands"",
""Greece"",
""Greenland"",
""Grenada"",
""Guadeloupe"",
""Guam"",
""Guatemala"",
""Guernsey"",
""Guinea"",
""Guinea-Bissau"",
""Guyana"",
""Haiti"",
""Heard Island and McDonald Islands"",
""Honduras"",
""Hong Kong"",
""Howland Island"",
""Hungary"",
""Iceland"",
""India"",
""Indian Ocean"",
""Indonesia"",
""Iran"",
""Iraq"",
""Ireland"",
""Isle of Man"",
""Israel"",
""Italy"",
""Jamaica"",
""Jan Mayen"",
""Japan"",
""Jarvis Island"",
""Jersey"",
""Johnston Atoll"",
""Jordan"",
""Juan de Nova Island"",
""Kazakhstan"",
""Kenya"",
""Kerguelen Archipelago"",
""Kingman Reef"",
""Kiribati"",
""Kosovo"",
""Kuwait"",
""Kyrgyzstan"",
""Laos"",
""Latvia"",
""Lebanon"",
""Lesotho"",
""Liberia"",
""Libya"",
""Liechtenstein"",
""Lithuania"",
""Luxembourg"",
""Macau"",
""Macedonia"",
""Madagascar"",
""Malawi"",
""Malaysia"",
""Maldives"",
""Mali"",
""Malta"",
""Marshall Islands"",
""Martinique"",
""Mauritania"",
""Mauritius"",
""Mayotte"",
""Mediterranean Sea"",
""Mexico"",
""Micronesia"",
""Midway Islands"",
""Moldova"",
""Monaco"",
""Mongolia"",
""Montenegro"",
""Montserrat"",
""Morocco"",
""Mozambique"",
""Myanmar"",
""Namibia"",
""Nauru"",
""Navassa Island"",
""Nepal"",
""Netherlands"",
""New Caledonia"",
""New Zealand"",
""Nicaragua"",
""Niger"",
""Nigeria"",
""Niue"",
""Norfolk Island"",
""North Korea"",
""North Sea"",
""Northern Mariana Islands"",
""Norway"",
""Oman"",
""Pacific Ocean"",
""Pakistan"",
""Palau"",
""Palmyra Atoll"",
""Panama"",
""Papua New Guinea"",
""Paracel Islands"",
""Paraguay"",
""Peru"",
""Philippines"",
""Pitcairn Islands"",
""Poland"",
""Portugal"",
""Puerto Rico"",
""Qatar"",
""Republic of the Congo"",
""Reunion"",
""Romania"",
""Ross Sea"",
""Russia"",
""Rwanda"",
""Saint Helena"",
""Saint Kitts and Nevis"",
""Saint Lucia"",
""Saint Pierre and Miquelon"",
""Saint Vincent and the Grenadines"",
""Samoa"",
""San Marino"",
""Sao Tome and Principe"",
""Saudi Arabia"",
""Senegal"",
""Serbia"",
""Seychelles"",
""Sierra Leone"",
""Singapore"",
""Sint Maarten"",
""Slovakia"",
""Slovenia"",
""Solomon Islands"",
""Somalia"",
""South Africa"",
""South Georgia and the South Sandwich Islands"",
""South Korea"",
""Southern Ocean"",
""Spain"",
""Spratly Islands"",
""Sri Lanka"",
""Sudan"",
""Suriname"",
""Svalbard"",
""Swaziland"",
""Sweden"",
""Switzerland"",
""Syria"",
""Taiwan"",
""Tajikistan"",
""Tanzania"",
""Tasman Sea"",
""Thailand"",
""Togo"",
""Tokelau"",
""Tonga"",
""Trinidad and Tobago"",
""Tromelin Island"",
""Tunisia"",
""Turkey"",
""Turkmenistan"",
""Turks and Caicos Islands"",
""Tuvalu"",
""USA"",
""Uganda"",
""Ukraine"",
""United Arab Emirates"",
""United Kingdom"",
""Uruguay"",
""Uzbekistan"",
""Vanuatu"",
""Venezuela"",
""Viet Nam"",
""Virgin Islands"",
""Wake Island"",
""Wallis and Futuna"",
""West Bank"",
""Western Sahara"",
""Yemen"",
""Zambia"",
""Zimbabwe"",
""not applicable"",
""not collected"",
""not provided"",
""restricted access"""
Name of the project within which the sequencing was organized
sample_name
free text
Name of the sample (automatically generated on submission to FNS)
project_name
free text
mandatory_attribute_field
ontology_ID
This must go together with host total mass.
host_total_mass_unit
mass unit
This must go together with sample storage temperature.
sample_storage_temperature_unit
temperature unit
bioactive compounds
polyphenols
sulphur compounds
phytosterols
other compounds
contain antioxidant compound group
mandatory_attribute
non_mandatory_attribute
OBI
DO
DOID
sex
female
female
sex
hermaphrodite
hermaphrodite
sex
male
male
sex
neuter
neuter
sex
not_applicable
sex:not_applicable
sex
not_collected
sex:not_collected
sex
not_provided
sex:not_provided
sex
other
other
host_age
not_provided
host_age:not_provided
host_age
not_applicable
host_age:not_applicable
UBERON
host_total_mass
not_applicable
host_total_mass:not_applicable
host_bodymass_index:not_provided
host_bodymass_index
not_applicable
host_bodymass_index:not_applicable
UO
ONS
host_total_mass
not_provided
host_total_mass:not_provided
target_subfragment
V1
V1
health_status
healthy
healthy
health_status
diseased
diseased
health_status
dead
dead
health_status
disease-free
disease-free
health_status
undetermined
undetermined
health_status
recovering
recovering
health_status
resolving
resolving
health_status
pre-existing condition
pre-existing condition
health_status
pathological
pathological
health_status
life threatening
life threatening
health_status
congenital
congenital
ENVO
CHEBI
target_subfragment
V2
V2
host_body_product
not_applicable
host_body_product:not_applicable
biotic_relationship
commensal
commensal
biotic_relationship
host associated
host associated
biotic_relationship
free living
free living
biotic_relationship
mutualism
mutualism
biotic_relationship
parasite
parasite
biotic_relationship
symbiont
symbiont
NCBITaxon
target_subfragment
V3
V3
target_subfragment
V4
V4
target_subfragment
V5
V5
target_subfragment
V6
V6
target_subfragment
V7
V7
target_subfragment
V8
V8
target_subfragment
V9
V9
investigation_type
bacteria_archaea
bacteria_archaea
investigation_type
eukaryote
eukaryote
investigation_type
metagenome
metagenome
investigation_type
metagenome-assembled_genome
metagenome-assembled_genome
investigation_type
metatranscriptome
metatranscriptome
investigation_type
mimarks-specimen
mimarks-specimen
investigation_type
mimarks-survey
mimarks-survey
investigation_type
organelle
organelle
investigation_type
plasmid
plasmid
investigation_type
single_amplified_enome
single_amplified_enome
investigation_type
uncultivated_viral_genomes
uncultivated_viral_genomes
investigation_type
virus
virus
target_subfragment
ITS1
ITS1
target_subfragment
ITS2
ITS2
target_subfragment
5.8S
5.8S
target_subfragment
none_of_the_above
none_of_the_above
sequencing_method
MinION
MinION
sequencing_method
GridION
GridION
sequencing_method
PromethION
PromethION
sequencing_method
454 GS
454 GS
sequencing_method
454 GS 20
454 GS 20
sequencing_method
454 GS FLX
454 GS FLX
sequencing_method
454 GS FLX+
454 GS FLX+
sequencing_method
454 GS FLX Titanium
454 GS FLX Titanium
sequencing_method
454 GS Junior
454 GS Junior
sequencing_method
Illumina Genome Analyzer
Illumina Genome Analyzer
sequencing_method
Illumina Genome Analyzer II
Illumina Genome Analyzer II
sequencing_method
Illumina Genome Analyzer IIx
Illumina Genome Analyzer IIx
sequencing_method
Illumina HiSeq 4000
Illumina HiSeq 4000
sequencing_method
Illumina HiSeq 3000
Illumina HiSeq 3000
sequencing_method
Illumina HiSeq 2500
Illumina HiSeq 2500
sequencing_method
Illumina HiSeq 2000
Illumina HiSeq 2000
sequencing_method
Illumina HiSeq 1500
Illumina HiSeq 1500
sequencing_method
Illumina HiSeq 1000
Illumina HiSeq 1000
sequencing_method
Illumina HiScanSQ
Illumina HiScanSQ
sequencing_method
Illumina MiSeq
Illumina MiSeq
sequencing_method
Illumina HiSeq X Five
Illumina HiSeq X Five
sequencing_method
Illumina HiSeq X Ten
Illumina HiSeq X Ten
sequencing_method
Illumina NextSeq 500
Illumina NextSeq 500
sequencing_method
Illumina NextSeq 550
Illumina NextSeq 550
sequencing_method
AB SOLiD System
AB SOLiD System
sequencing_method
AB SOLiD System 2.0
AB SOLiD System 2.0
sequencing_method
AB SOLiD System 3.0
AB SOLiD System 3.0
sequencing_method
AB SOLiD 3 Plus System
AB SOLiD 3 Plus System
sequencing_method
AB SOLiD 4 System
AB SOLiD 4 System
sequencing_method
AB SOLiD 4hq System
AB SOLiD 4hq System
sequencing_method
AB SOLiD PI System
AB SOLiD PI System
sequencing_method
AB 5500 Genetic Analyzer
AB 5500 Genetic Analyzer
sequencing_method
AB 5500xl Genetic Analyzer
AB 5500xl Genetic Analyzer
sequencing_method
AB 5500xl-W Genetic Analysis System
AB 5500xl-W Genetic Analysis System
sequencing_method
Ion Torrent PGM
Ion Torrent PGM
sequencing_method
Ion Torrent Proton
Ion Torrent Proton
sequencing_method
Ion Torrent S5
Ion Torrent S5
sequencing_method
Ion Torrent S5 XL
Ion Torrent S5 XL
sequencing_method
PacBio RS
PacBio RS
sequencing_method
PacBio RS II
PacBio RS II
sequencing_method
Sequel
Sequel
sequencing_method
AB 3730xL Genetic Analyzer
AB 3730xL Genetic Analyzer
sequencing_method
AB 3730 Genetic Analyzer
AB 3730 Genetic Analyzer
sequencing_method
AB 3500xL Genetic Analyzer
AB 3500xL Genetic Analyzer
sequencing_method
AB 3500 Genetic Analyzer
AB 3500 Genetic Analyzer
sequencing_method
AB 3130xL Genetic Analyzer
AB 3130xL Genetic Analyzer
sequencing_method
AB 3130 Genetic Analyzer
AB 3130 Genetic Analyzer
sequencing_method
AB 310 Genetic Analyzer
AB 310 Genetic Analyzer
sequencing_method
BGISEQ-500
BGISEQ-500
geo_location
Afghanistan
Afghanistan
geo_location
Albania
Albania
geo_location
Algeria
Algeria
geo_location
American Samoa
American Samoa
geo_location
Andorra
Andorra
geo_location
Angola
Angola
geo_location
Anguilla
Anguilla
geo_location
Antarctica
Antarctica
geo_location
Antigua and Barbuda
Antigua and Barbuda
geo_location
Arctic Ocean
Arctic Ocean
geo_location
Argentina
Argentina
geo_location
Armenia
Armenia
geo_location
Aruba
Aruba
geo_location
Ashmore and Cartier Islands
Ashmore and Cartier Islands
geo_location
Atlantic Ocean
Atlantic Ocean
geo_location
Australia
Australia
geo_location
Austria
Austria
geo_location
Azerbaijan
Azerbaijan
geo_location
Bahamas
Bahamas
geo_location
Bahrain
Bahrain
geo_location
Baker Island
Baker Island
geo_location
Baltic Sea
Baltic Sea
geo_location
Bangladesh
Bangladesh
geo_location
Barbados
Barbados
geo_location
Bassas da India
Bassas da India
geo_location
Belarus
Belarus
geo_location
Belgium
Belgium
geo_location
Belize
Belize
geo_location
Benin
Benin
geo_location
Bermuda
Bermuda
geo_location
Bhutan
Bhutan
geo_location
Bolivia
Bolivia
geo_location
Borneo
Borneo
geo_location
Bosnia and Herzegovina
Bosnia and Herzegovina
geo_location
Botswana
Botswana
geo_location
Bouvet Island
Bouvet Island
geo_location
Brazil
Brazil
geo_location
British Virgin Islands
British Virgin Islands
geo_location
Brunei
Brunei
geo_location
Bulgaria
Bulgaria
geo_location
Burkina Faso
Burkina Faso
geo_location
Burundi
Burundi
geo_location
Cambodia
Cambodia
geo_location
Cameroon
Cameroon
geo_location
Canada
Canada
geo_location
Cape Verde
Cape Verde
geo_location
Cayman Islands
Cayman Islands
geo_location
Central African Republic
Central African Republic
geo_location
Chad
Chad
geo_location
Chile
Chile
geo_location
China
China
geo_location
Christmas Island
Christmas Island
geo_location
Clipperton Island
Clipperton Island
geo_location
Cocos Islands
Cocos Islands
geo_location
Colombia
Colombia
geo_location
Comoros
Comoros
geo_location
Cook Islands
Cook Islands
geo_location
Coral Sea Islands
Coral Sea Islands
geo_location
Costa Rica
Costa Rica
geo_location
Cote d'Ivoire
Cote d'Ivoire
geo_location
Croatia
Croatia
geo_location
Cuba
Cuba
geo_location
Curacao
Curacao
geo_location
Cyprus
Cyprus
geo_location
Czech Republic
Czech Republic
geo_location
Democratic Republic of the Congo
Democratic Republic of the Congo
geo_location
Denmark
Denmark
geo_location
Djibouti
Djibouti
geo_location
Dominica
Dominica
geo_location
Dominican Republic
Dominican Republic
geo_location
East Timor
East Timor
geo_location
Ecuador
Ecuador
geo_location
Egypt
Egypt
geo_location
El Salvador
El Salvador
geo_location
Equatorial Guinea
Equatorial Guinea
geo_location
Eritrea
Eritrea
geo_location
Estonia
Estonia
geo_location
Ethiopia
Ethiopia
geo_location
Europa Island
Europa Island
geo_location
Falkland Islands (Islas Malvinas)
Falkland Islands (Islas Malvinas)
geo_location
Faroe Islands
Faroe Islands
geo_location
Fiji
Fiji
geo_location
Finland
Finland
geo_location
France
France
geo_location
French Guiana
French Guiana
geo_location
French Polynesia
French Polynesia
geo_location
French Southern and Antarctic Lands
French Southern and Antarctic Lands
geo_location
Gabon
Gabon
geo_location
Gambia
Gambia
geo_location
Gaza Strip
Gaza Strip
geo_location
Georgia
Georgia
geo_location
Germany
Germany
geo_location
Ghana
Ghana
geo_location
Gibraltar
Gibraltar
geo_location
Glorioso Islands
Glorioso Islands
geo_location
Greece
Greece
geo_location
Greenland
Greenland
geo_location
Grenada
Grenada
geo_location
Guadeloupe
Guadeloupe
geo_location
Guam
Guam
geo_location
Guatemala
Guatemala
geo_location
Guernsey
Guernsey
geo_location
Guinea
Guinea
geo_location
Guinea-Bissau
Guinea-Bissau
geo_location
Guyana
Guyana
geo_location
Haiti
Haiti
geo_location
Heard Island and McDonald Islands
Heard Island and McDonald Islands
geo_location
Honduras
Honduras
geo_location
Hong Kong
Hong Kong
geo_location
Howland Island
Howland Island
geo_location
Hungary
Hungary
geo_location
Iceland
Iceland
geo_location
India
India
geo_location
Indian Ocean
Indian Ocean
geo_location
Indonesia
Indonesia
geo_location
Iran
Iran
geo_location
Iraq
Iraq
geo_location
Ireland
Ireland
geo_location
Isle of Man
Isle of Man
geo_location
Israel
Israel
geo_location
Italy
Italy
geo_location
Jamaica
Jamaica
geo_location
Jan Mayen
Jan Mayen
geo_location
Japan
Japan
geo_location
Jarvis Island
Jarvis Island
geo_location
Jersey
Jersey
geo_location
Johnston Atoll
Johnston Atoll
geo_location
Jordan
Jordan
geo_location
Juan de Nova Island
Juan de Nova Island
geo_location
Kazakhstan
Kazakhstan
geo_location
Kenya
Kenya
geo_location
Kerguelen Archipelago
Kerguelen Archipelago
geo_location
Kingman Reef
Kingman Reef
geo_location
Kiribati
Kiribati
geo_location
Kosovo
Kosovo
geo_location
Kuwait
Kuwait
geo_location
Kyrgyzstan
Kyrgyzstan
geo_location
Laos
Laos
geo_location
Latvia
Latvia
geo_location
Lebanon
Lebanon
geo_location
Lesotho
Lesotho
geo_location
Liberia
Liberia
geo_location
Libya
Libya
geo_location
Liechtenstein
Liechtenstein
geo_location
Lithuania
Lithuania
geo_location
Luxembourg
Luxembourg
geo_location
Macau
Macau
geo_location
Macedonia
Macedonia
geo_location
Madagascar
Madagascar
geo_location
Malawi
Malawi
geo_location
Malaysia
Malaysia
geo_location
Maldives
Maldives
geo_location
Mali
Mali
geo_location
Malta
Malta
geo_location
Marshall Islands
Marshall Islands
geo_location
Martinique
Martinique
geo_location
Mauritania
Mauritania
geo_location
Mauritius
Mauritius
geo_location
Mayotte
Mayotte
geo_location
Mediterranean Sea
Mediterranean Sea
geo_location
Mexico
Mexico
geo_location
Micronesia
Micronesia
geo_location
Midway Islands
Midway Islands
geo_location
Moldova
Moldova
geo_location
Monaco
Monaco
geo_location
Mongolia
Mongolia
geo_location
Montenegro
Montenegro
geo_location
Montserrat
Montserrat
geo_location
Morocco
Morocco
geo_location
Mozambique
Mozambique
geo_location
Myanmar
Myanmar
geo_location
Namibia
Namibia
geo_location
Nauru
Nauru
geo_location
Navassa Island
Navassa Island
geo_location
Nepal
Nepal
geo_location
Netherlands
Netherlands
geo_location
New Caledonia
New Caledonia
geo_location
New Zealand
New Zealand
geo_location
Nicaragua
Nicaragua
geo_location
Niger
Niger
geo_location
Nigeria
Nigeria
geo_location
Niue
Niue
geo_location
Norfolk Island
Norfolk Island
geo_location
North Korea
North Korea
geo_location
North Sea
North Sea
geo_location
Northern Mariana Islands
Northern Mariana Islands
geo_location
Norway
Norway
geo_location
Oman
Oman
geo_location
Pacific Ocean
Pacific Ocean
geo_location
Pakistan
Pakistan
geo_location
Palau
Palau
geo_location
Palmyra Atoll
Palmyra Atoll
geo_location
Panama
Panama
geo_location
Papua New Guinea
Papua New Guinea
geo_location
Paracel Islands
Paracel Islands
geo_location
Paraguay
Paraguay
geo_location
Peru
Peru
geo_location
Philippines
Philippines
geo_location
Pitcairn Islands
Pitcairn Islands
geo_location
Poland
Poland
geo_location
Portugal
Portugal
geo_location
Puerto Rico
Puerto Rico
geo_location
Qatar
Qatar
geo_location
Republic of the Congo
Republic of the Congo
geo_location
Reunion
Reunion
geo_location
Romania
Romania
geo_location
Ross Sea
Ross Sea
geo_location
Russia
Russia
geo_location
Rwanda
Rwanda
geo_location
Saint Helena
Saint Helena
geo_location
Saint Kitts and Nevis
Saint Kitts and Nevis
geo_location
Saint Lucia
Saint Lucia
geo_location
Saint Pierre and Miquelon
Saint Pierre and Miquelon
geo_location
Saint Vincent and the Grenadines
Saint Vincent and the Grenadines
geo_location
Samoa
Samoa
geo_location
San Marino
San Marino
geo_location
Sao Tome and Principe
Sao Tome and Principe
geo_location
Saudi Arabia
Saudi Arabia
geo_location
Senegal
Senegal
geo_location
Serbia
Serbia
geo_location
Seychelles
Seychelles
geo_location
Sierra Leone
Sierra Leone
geo_location
Singapore
Singapore
geo_location
Sint Maarten
Sint Maarten
geo_location
Slovakia
Slovakia
geo_location
Slovenia
Slovenia
geo_location
Solomon Islands
Solomon Islands
geo_location
Somalia
Somalia
geo_location
South Africa
South Africa
geo_location
South Georgia and the South Sandwich Islands
South Georgia and the South Sandwich Islands
geo_location
South Korea
South Korea
geo_location
Southern Ocean
Southern Ocean
geo_location
Spain
Spain
geo_location
Spratly Islands
Spratly Islands
geo_location
Sri Lanka
Sri Lanka
geo_location
Sudan
Sudan
geo_location
Suriname
Suriname
geo_location
Svalbard
Svalbard
geo_location
Swaziland
Swaziland
geo_location
Sweden
Sweden
geo_location
Switzerland
Switzerland
geo_location
Syria
Syria
geo_location
Taiwan
Taiwan
geo_location
Tajikistan
Tajikistan
geo_location
Tanzania
Tanzania
geo_location
Tasman Sea
Tasman Sea
geo_location
Thailand
Thailand
geo_location
Togo
Togo
geo_location
Tokelau
Tokelau
geo_location
Tonga
Tonga
geo_location
Trinidad and Tobago
Trinidad and Tobago
geo_location
Tromelin Island
Tromelin Island
geo_location
Tunisia
Tunisia
geo_location
Turkey
Turkey
geo_location
Turkmenistan
Turkmenistan
geo_location
Turks and Caicos Islands
Turks and Caicos Islands
geo_location
Tuvalu
Tuvalu
geo_location
USA
USA
geo_location
Uganda
Uganda
geo_location
Ukraine
Ukraine
geo_location
United Arab Emirates
United Arab Emirates
geo_location
United Kingdom
United Kingdom
geo_location
Uruguay
Uruguay
geo_location
Uzbekistan
Uzbekistan
geo_location
Vanuatu
Vanuatu
geo_location
Venezuela
Venezuela
geo_location
Viet Nam
Viet Nam
geo_location
Virgin Islands
Virgin Islands
geo_location
Wake Island
Wake Island
geo_location
Wallis and Futuna
Wallis and Futuna
geo_location
West Bank
West Bank
geo_location
Western Sahara
Western Sahara
geo_location
Yemen
Yemen
geo_location
Zambia
Zambia
geo_location
Zimbabwe
Zimbabwe
geo_location
not applicable
not applicable
geo_location
not collected
not collected
geo_location
not provided
not provided
geo_location
restricted access
restricted access
sample_collection_device
tube device
tube device
sample_collection_device
syringe
syringe
sample_collection_device
core
core
sample_collection_device
spatula
spatula
sample_collection_device
portion of sample
portion of sample
sample_collection_device
biopsy
biopsy
sample_collection_device
other device
other device
target_gene
16S rRNA
16S rRNA
target_gene
ITS
ITS
target_gene
Whole genome
Whole genome
target_gene
18S rRNA
18S rRNA
target_gene
target gene not provided
target gene not provided
target_gene
other target gene
other target gene
host_genotype
wildtype
wildtype
host_genotype
host genotype not provided
host genotype not provided
host_genotype
host genotype not applicable
host genotype not applicable
host_genotype
homo sapiens
homo sapiens
host_genotype
129 Mice
129 Mice
host_genotype
129-Elite (SOPF) Mouse
129-Elite (SOPF) Mouse
host_genotype
AKR Mouse
AKR Mouse
host_genotype
Athymic Heterozygous Mouse (Athymic HE)
Athymic Heterozygous Mouse (Athymic HE)
host_genotype
Athymic Nude Mouse
Athymic Nude Mouse
host_genotype
B10.A/Cr Mouse
B10.A/Cr Mouse
host_genotype
B6 Albino Mouse
B6 Albino Mouse
host_genotype
B6C3F1 Mouse
B6C3F1 Mouse
host_genotype
B6CBAF1 Mouse
B6CBAF1 Mouse
host_genotype
B6CBAF1/J (JAX™ Mice Strain)
B6CBAF1/J (JAX™ Mice Strain)
host_genotype
B6D2F1 (BDF1) Mouse
B6D2F1 (BDF1) Mouse
host_genotype
B6D2F1/J (JAX™ Mice Strain)
B6D2F1/J (JAX™ Mice Strain)
host_genotype
BALB/c Heterozygous Mouse (NU+ B/c; NU+ BALB/c)
BALB/c Heterozygous Mouse (NU+ B/c; NU+ BALB/c)
host_genotype
BALB/c Mice
BALB/c Mice
host_genotype
BALB/c Nude (JAX™ Mice Strain)
BALB/c Nude (JAX™ Mice Strain)
host_genotype
BALB/c Nude Mouse
BALB/c Nude Mouse
host_genotype
BALB/c-Elite Mouse
BALB/c-Elite Mouse
host_genotype
BALB/cByJ (JAX™ Mice Strain)
BALB/cByJ (JAX™ Mice Strain)
host_genotype
BALB/cByJ SOPF (JAX™ Mice Strain)
BALB/cByJ SOPF (JAX™ Mice Strain)
host_genotype
BDIX Rat
BDIX Rat
host_genotype
Black Swiss Mouse
Black Swiss Mouse
host_genotype
Brown Norway Rat
Brown Norway Rat
host_genotype
Buffalo Rat
Buffalo Rat
host_genotype
C3H Mice
C3H Mice
host_genotype
C3H SOPF Mouse
C3H SOPF Mouse
host_genotype
C3H/HeOuJ (JAX™ Mice Strain)
C3H/HeOuJ (JAX™ Mice Strain)
host_genotype
C57BL/6 Mouse
C57BL/6 Mouse
host_genotype
C57BL/6-Aged Mouse
C57BL/6-Aged Mouse
host_genotype
C57BL/6-Elite (SOPF) Mouse
C57BL/6-Elite (SOPF) Mouse
host_genotype
C57BL/6-Germ-Free Mouse
C57BL/6-Germ-Free Mouse
host_genotype
C57BL/6J (JAX™ Mice Strain)
C57BL/6J (JAX™ Mice Strain)
host_genotype
C57BL/6J SOPF (JAX™ Mice Strain)
C57BL/6J SOPF (JAX™ Mice Strain)
host_genotype
CB6F1 Mouse
CB6F1 Mouse
host_genotype
CBA Mouse
CBA Mouse
host_genotype
CBA/J (JAX™ Mice Strain)
CBA/J (JAX™ Mice Strain)
host_genotype
CBAB6F1 Mouse
CBAB6F1 Mouse
host_genotype
CD (SD) IGS SOPF Rat
CD (SD) IGS SOPF Rat
host_genotype
CD Hairless Rat
CD Hairless Rat
host_genotype
CD-1® Heterozygous Mouse (NU+ CD-1®)
CD-1® Heterozygous Mouse (NU+ CD-1®)
host_genotype
CD-1® IGS Mouse
CD-1® IGS Mouse
host_genotype
CD-1® Nude Mouse
CD-1® Nude Mouse
host_genotype
CD® (Sprague Dawley) IGS Rat
CD® (Sprague Dawley) IGS Rat
host_genotype
CD1-Elite (SOPF) Mouse
CD1-Elite (SOPF) Mouse
host_genotype
CD2F1 (CDF1) Mouse
CD2F1 (CDF1) Mouse
host_genotype
CF-1™ Mouse
CF-1™ Mouse
host_genotype
Copenhagen Rat
Copenhagen Rat
host_genotype
Dahl/Salt Sensitive Rat
Dahl/Salt Sensitive Rat
host_genotype
DBA/1J (JAX™ Mice Strain)
DBA/1J (JAX™ Mice Strain)
host_genotype
DBA/2 Mouse
DBA/2 Mouse
host_genotype
DBA/2J (JAX™ Mice Strain)
DBA/2J (JAX™ Mice Strain)
host_genotype
FHH Rat
FHH Rat
host_genotype
Fischer (CDF) Rat
Fischer (CDF) Rat
host_genotype
Fischer (SAS FISCH) Rat
Fischer (SAS FISCH) Rat
host_genotype
Fox Chase CB17 Mouse
Fox Chase CB17 Mouse
host_genotype
Fox Chase SCID Beige Mouse
Fox Chase SCID Beige Mouse
host_genotype
Fox Chase SCID Mouse
Fox Chase SCID Mouse
host_genotype
FVB Mouse
FVB Mouse
host_genotype
Hartley Guinea Pig
Hartley Guinea Pig
host_genotype
JAX Mice Metabolic Models
JAX Mice Metabolic Models
host_genotype
K18-hACE2 (JAX™ Mice Strain)
K18-hACE2 (JAX™ Mice Strain)
host_genotype
Lewis Rat
Lewis Rat
host_genotype
Lister Hooded Rat
Lister Hooded Rat
host_genotype
Long-Evans Rat
Long-Evans Rat
host_genotype
LVG Golden Syrian Hamster
LVG Golden Syrian Hamster
host_genotype
Ly5.1 Mouse
Ly5.1 Mouse
host_genotype
Mongolian Gerbil
Mongolian Gerbil
host_genotype
NCI A/JCR Mouse
NCI A/JCR Mouse
host_genotype
NCI B6-Ly5.1/Cr Mouse
NCI B6-Ly5.1/Cr Mouse
host_genotype
NCI SCID/NCr Mouse
NCI SCID/NCr Mouse
host_genotype
New Zealand White Rabbit - CR
New Zealand White Rabbit - CR
host_genotype
NIH-III Heterozygous Mouse (NIH-III-HE)
NIH-III Heterozygous Mouse (NIH-III-HE)
host_genotype
NIH-III Nude Mouse
NIH-III Nude Mouse
host_genotype
NMRI Mouse
NMRI Mouse
host_genotype
NMRI Nude Mouse
NMRI Nude Mouse
host_genotype
NMRI SOPF Mouse
NMRI SOPF Mouse
host_genotype
Noble Rat
Noble Rat
host_genotype
NOD SCID (JAX™ Mice Strain)
NOD SCID (JAX™ Mice Strain)
host_genotype
NOD SCID Mouse
NOD SCID Mouse
host_genotype
NRG Mice (JAX™ Mice Strain)
NRG Mice (JAX™ Mice Strain)
host_genotype
NSG® Mice (JAX™ Mice Strain)
NSG® Mice (JAX™ Mice Strain)
host_genotype
NU/NU Heterozygous Mouse (NU+)
NU/NU Heterozygous Mouse (NU+)
host_genotype
NU/NU Nude Mouse
NU/NU Nude Mouse
host_genotype
Obese Prone CD Rat
Obese Prone CD Rat
host_genotype
Obese Resistant CD Rat
Obese Resistant CD Rat
host_genotype
OF1 Mouse
OF1 Mouse
host_genotype
OT I Mouse
OT I Mouse
host_genotype
OT II Mouse
OT II Mouse
host_genotype
PCK Rat
PCK Rat
host_genotype
PGP Mouse (P-glycoprotein Deficient)
PGP Mouse (P-glycoprotein Deficient)
host_genotype
RNU Heterozygous Rat (RNU+)
RNU Heterozygous Rat (RNU+)
host_genotype
RNU Nude Rat
RNU Nude Rat
host_genotype
SAS Sprague Dawley Rat
SAS Sprague Dawley Rat
host_genotype
SCID Hairless Congenic (SHC) Mouse
SCID Hairless Congenic (SHC) Mouse
host_genotype
SCID Hairless Outbred (SHO®) Mouse
SCID Hairless Outbred (SHO®) Mouse
host_genotype
Sencar Mouse
Sencar Mouse
host_genotype
Sentinel Mouse (Athymic HE)
Sentinel Mouse (Athymic HE)
host_genotype
Sentinel Mouse (NU HE)
Sentinel Mouse (NU HE)
host_genotype
Sentinel Rat (HET RNU)
Sentinel Rat (HET RNU)
host_genotype
SJL-Elite Mouse
SJL-Elite Mouse
host_genotype
SJL/J (JAX™ Mice Strain)
SJL/J (JAX™ Mice Strain)
host_genotype
SKH1 Hairless Mouse
SKH1 Hairless Mouse
host_genotype
SKH1-Elite Mouse
SKH1-Elite Mouse
host_genotype
Spontaneously Hypertensive (SHR) Rat
Spontaneously Hypertensive (SHR) Rat
host_genotype
Spontaneously Hypertensive Heart Failure (SHHF) Rat (Lean +/?)
Spontaneously Hypertensive Heart Failure (SHHF) Rat (Lean +/?)
host_genotype
Spontaneously Hypertensive Heart Failure (SHHF) Rat (Obese cp/cp)
Spontaneously Hypertensive Heart Failure (SHHF) Rat (Obese cp/cp)
host_genotype
Spontaneously Hypertensive Obese (SHROB) Rat
Spontaneously Hypertensive Obese (SHROB) Rat
host_genotype
Spontaneously Hypertensive Stroke Prone (SHRSP) Rat
Spontaneously Hypertensive Stroke Prone (SHRSP) Rat
host_genotype
SS-13BN Rat
SS-13BN Rat
host_genotype
Swiss Nude Mice
Swiss Nude Mice
host_genotype
Swiss Webster (CFW) Mouse
Swiss Webster (CFW) Mouse
host_genotype
THE POUND MOUSE
THE POUND MOUSE
host_genotype
WAG Rat
WAG Rat
host_genotype
Wistar Furth Rat
Wistar Furth Rat
host_genotype
Wistar Han IGS Rat
Wistar Han IGS Rat
host_genotype
Wistar IGS Rat
Wistar IGS Rat
host_genotype
Wistar Kyoto (WKY) Rat
Wistar Kyoto (WKY) Rat
host_genotype
Wistar WU Rat
Wistar WU Rat
host_genotype
ZDF Rat (Lean +/?)
ZDF Rat (Lean +/?)
host_genotype
ZDF Rat (Lean fa/+)
ZDF Rat (Lean fa/+)
host_genotype
ZDF Rat (Obese fa/fa)
ZDF Rat (Obese fa/fa)
host_genotype
ZDSD Rat
ZDSD Rat
host_genotype
ZSF1 Rat (Lean)
ZSF1 Rat (Lean)
host_genotype
ZSF1 Rat (Obese)
ZSF1 Rat (Obese)
host_genotype
Zucker Rat
Zucker Rat
host_genotype
Zucker Rat (Lean)
Zucker Rat (Lean)
host_genotype
Zucker Rat (Obese)
Zucker Rat (Obese)
Pance Panov (JSI)
has-study-type
maps-to-ISA-term
STUDY_TYPE