Aleksandra Shumkoska Anton Bivolarov Francesco Vitali Giovanni Bacci Maria Traka Pance Panov Pance Panov (JSI) 17 ЈAN 2023 Microbiome module of FNS-H FNS_H english FNS-Harmony Ontology 1.2 1.3 isMandatory possible_attribute_values related_external_ontology_class related_external_ontology_class_label related_external_class_ontology_ID Allows reference to a resource Pance Panov (JSI) has-resouce-reference Pance Panov (JSI) has-organism Pance Panov (JSI) has-attribute Pance Panov (JSI) has-spot-descriptor Pance Panov (JSI) has_platform Pance Panov (JSI) has-library Pance Panov (JSI) referes-to SAMPLE_REF_PRIMARY_ID The reference to the sample Pance Panov (JSI) has-primary-sample-ref A reference to the additional sample id SAMPLE_REF_EXTERNAL_ID Pance Panov (JSI) has-external-sample-ref Pance Panov (JSI) part-of Pance Panov (JSI) produces-output-file has-part Information about date and time of the submission to the FNS Cloud SUBMITTED_AT Pance Panov (JSI) study-submitted-on Information about the source database SOURCE Pance Panov (JSI) has-source-information Unique identification key in the source database RESOURCE_ID Pance Panov (JSI) has-resource-ID Additional identification key SOURCE_SECONDARY_ID Pance Panov (JSI) has-study-source-secondaryID Identification ID of the submitters RESOURCE_SUBMITTER_ID Pance Panov (JSI) has-resource-submitterID The title of the study STUDY_TITLE Pance Panov (JSI) has-study-title Provides Contact Information CONTACT_INFORMATION Pance Panov (JSI) has-study-contact-information Resource name e.g. PubMed, ENA-STUDY, etc. RESOURCE Pance Panov (JSI) has-resource-name The ID of the Resource ID Pance Panov (JSI) has-resource-reference-ID Pance Panov (JSI) sample-submitted-on Pance Panov (JSI) has-sample-alias Pance Panov (JSI) has-sample-title Taxon ID based on NCIB Taxon Database TAXON_ID Pance Panov (JSI) has-taxon-ID Scientific name of the organism SCIENTIFIC_NAME Pance Panov (JSI) has-taxon-scientific-name Common name of the organism COMMON_NAME Pance Panov (JSI) has-taxon-common-name Attribute name KEY Pance Panov (JSI) has-attribute-key Attribute value VALUE Pance Panov (JSI) has-attribute-value The index of the read e.g. 0,1,2, etc READ_INDEX Pance Panov (JSI) has-read-index Read Identification Information e.g. Forward, Left Adapter, etc. READ_LABEL Pance Panov (JSI) has-read-label Read Identification Information e.g. Forward, Left Adapter, etc. READ_LABEL Pance Panov (JSI) has-class-label READ_TYPE The type of the read e.g. Forward, Adapter, BarCode, etc. Pance Panov (JSI) has-read-type Information about the instument model used e.g. Illumina MiSeq INSTRUMENT_MODEL Pance Panov (JSI) has_instrument_model The name of the library used LIBRARY_NAME Pance Panov (JSI) has-library-name Information about the applied strategy LIBRARY_STRATEGY Pance Panov (JSI) has_library_strategy Library source information LIBRARY_SOURCE Pance Panov (JSI) has_library_source Library selection information LIBRARY_SELECTION Pance Panov (JSI) has_library_selection Additional information about the experiment TITLE Pance Panov (JSI) has-experiment-title Alias of the experiment in the study EXPERIMENT_ALIAS Pance Panov (JSI) has-experiment-alias Pance Panov (JSI) experiment-submitted-on Pance Panov (JSI) SUBMITTED_AT submitted-at Pance Panov (JSI) has-title Pance Panov (JSI) has-ID EXPERIMENT_ALIAS RUN_ALIAS SAMPLE_ALIAS Pance Panov (JSI) has-alias The checksum of the file produced FILE_CHECKSUM Pance Panov (JSI) has-file-checksum The checksum method used FILE_CHECKSUM_METHOD Pance Panov (JSI) has-file-checksum-method Identification of the file FILE_NAME Pance Panov (JSI) has-file-name The type of the file e.g. fastq, sff, etc. FILE_TYPE Pance Panov (JSI) has-file-type Encoding of the file e.g. ascii, etc. FILE_QUALITY_ENCODING Pance Panov (JSI) has-file-quality-encoding Quality encoding scoring system FILE_QUALITY_SCORING_SYSTEM Pance Panov (JSI) has-file-quality-scoring-system Additional information about the run TITLE Pance Panov (JSI) has-run-title Alias of the run in the study RUN_ALIAS Pance Panov (JSI) has-run-alias Pance Panov (JSI) run-submitted-on Pance Panov (JSI) has-name BFO: independent continuant DOID:disease ENVO:enviromental_material OBI:material_processing ONS:diet UBERON: anatomical entity UO:mass unit UO:temperature unit 1 1 1 Pance Panov (JSI) study SUBMITTED-AT 1 STUDY_TITLE 1 1 1 1 Pance Panov (JSI) sample SAMPLE_ALIAS SUBMITTED-AT http://purl.org/dc/elements/1.1/title TITLE 1 1 Pance Panov (JSI) experiment TITLE EXPERIMENT_ALIAS http://purl.org/dc/elements/1.1/date SUBMITTED-AT 1 1 Pance Panov (JSI) run RUN_ALIAS SUBMITTED-AT TITLE Pance Panov (JSI) study_type 1 1 Pance Panov (JSI) resource_reference 1 RESOURCE 1 1 Pance Panov (JSI) organism Pance Panov (JSI) attribute SPOT_DESCRIPTOR Pance Panov (JSI) spot_descriptor Pance Panov (JSI) platform Pance Panov (JSI) library LIBRARY_NAME Pance Panov (JSI) file FILE_NAME general_sample_attribute maybe better to retain the values specified from ENA checklist, but OBI mapping could be useful investigation_type """bacteria_archaea"", ""eukaryote"", ""metagenome"", ""metagenome-assembled genome"", ""metatranscriptome"", ""mimarks-specimen"", ""mimarks-survey"", ""organelle"", ""plasmid"", ""single amplified enome"", ""uncultivated viral genomes"", ""virus""" sequencing assey Reference to online paper, etc. Giovanni: This could be optional. Most users will upload sequence files first and then submit the work for consideration in peer reviewed journals so this field could not be specified during the submission process. electronic_resource sampling_sample_attribute The method or device employed for collecting the sample. free text sample_collection_device "tube", "syringe", "core", "spatula", "portion of sample", "biopsy", "other" Any processing applied to the sample during or after retrieving the sample from environment. This field accepts OBI terms Ontology-restricted text sample_material_processing material processing Link to a literature reference, electronic resource or a standard operating procedure (SOP), that describes the material separation to recover the nucleic acid fraction from a sample PMID, DOI, URL nucleid_acid_extraction 1 Temperature at which sample was stored, e.g. -80 integer+unit sample_storage_temperature Date of the sample collection. date and time - timestamp collection_date material_sample_attribute Biome is a general environment descriptor of the broad ecological context of a sample. Ontology-restricted text all children terms can be used as values enviroment_biome independent contiuant Local is the local environment descriptor of the ecological context of a sample. Ontology-restricted text all children terms can be used as values enviroment_local Medium refers to the material that was displaced by the sample, or material in which a sample was embedded, prior to the sampling event Ontology-restricted text all children terms can be used as values enviroment_medium independent continuant Substance produced by the body, e.g. stool, mucus, where the sample was obtained from. host_body_product enviromental material Description of relationship(s) between the subject organism and other organism(s) it is associated with. E.g., parasite on species X; mutualist with species Y could be useful to easily distinguish between host associated studies (i.e. microbiota of human gut) respect to food security studies (i.e. microbiota of a cheese) difficult to find a single ontology, better to use the fixed list biotic_relationship "commensal", “host associated”, "free living", "mutualism", "parasite", "symbiont" The host taxid, if host is involved NCBITaxon is really huge, but I can’tfind the simple taxid number Ontology-restricted text specific_host sequencing_sample_attribute Targeted gene or locus name for marker gene studies. Ontology-restricted text can’t find an ontology with all the possible genes locus. At best, we could use a restricted list target_gene Name of subfragment of a gene or locus. Important to e.g. identify special regions on marker genes like V6 on 16S rRNA target_subfragment “V1”, “V2”,“V3”,“V4”,“V5”,“V6”,“V7”,“V8”,“V9”,“ITS1”,“ITS2”,“5.8S”, “none of the above” or combination of those PCR primers that were used to amplify the sequence of the targeted gene, locus or subfragment. forward or reverse primer sequencing here we could make some check for compliance with the convention for DNA, so it’s not really ree text. Example FWD: dna, REV: dna pcr_primers Sequencing method used; e.g. Sanger, pyrosequencing, ABI-solid sequencing_method [MinION|GridION|PromethION|454 GS|454 GS 20|454 GS FLX|454 GS FLX+|454 GS FLX Titanium|454 GS Junior|Illumina Genome Analyzer|Illumina Genome Analyzer II|Illumina Genome Analyzer IIx|Illumina HiSeq 4000|Illumina HiSeq 3000|Illumina HiSeq 2500|Illumina HiSeq 2000|Illumina HiSeq 1500|Illumina HiSeq 1000|Illumina HiScanSQ|Illumina MiSeq|Illumina HiSeq X Five|Illumina HiSeq X Ten|Illumina NextSeq 500|Illumina NextSeq 550|AB SOLiD System|AB SOLiD System 2.0|AB SOLiD System 3.0|AB SOLiD 3 Plus System|AB SOLiD 4 System|AB SOLiD 4hq System|AB SOLiD PI System|AB 5500 Genetic Analyzer|AB 5500xl Genetic Analyzer|AB 5500xl-W Genetic Analysis System|Ion Torrent PGM|Ion Torrent Proton|Ion Torrent S5|Ion Torrent S5 XL|PacBio RS|PacBio RS II|Sequel|AB 3730xL Genetic Analyzer|AB 3730 Genetic Analyzer|AB 3500xL Genetic Analyzer|AB 3500 Genetic Analyzer|AB 3130xL Genetic Analyzer|AB 3130 Genetic Analyzer|AB 310 Genetic Analyzer|BGISEQ-500] host_sample_attribute Health or disease status of specific host at time of collection general classification here, would use the fixed list health_status healthy, diseased,dead, disease-free, undetermined, recovering, resolving, pre-existing condition, pathological, life threatening, congenital List of diseases with which the host has been diagnosed; can include multiple diagnoses. the pity here is that I could not find DO in Ontobee or OLS, but seems equivalent to the DOID ontology that is in ontobee or OLS. Here the aim is to specify the class above host_disease_status Ontology-restricted text Disease Gender or sex of the host. sex Age of host at the time of sampling; relevant scale depends on species and study, e.g. could be seconds for amoebae or centuries for trees integer, accepting also “not provided” or “not applicable” host_age Name of body site where the sample was obtained from, such as a specific organ or tissue (tongue, lung etc...). Ontology-restricted text host_body_site anatomical entity Body mass index, calculated as weight/(height)squared. float, accepting also “not provided” or “not applicable” host_bodymass_index 1 Total mass of the host at collection, the unit depends on host float + unit; accepting also “not provided” or “not applicable” host_total_mass Type of diet depending on the host, for animals omnivore, herbivore etc., for humans high-fat, Mediterranean etc.; can include multiple diet types host_diet diet specification of special diet; can include multiple special diets special_diet diet Observed genotype free text in case of animal studies, in addition to the taxid, would useful to have the strain (i.e. F344, wistar). Could not find an ontology for that (which by itself is a gap…) host_genotype 'wildtype', 'not provided', 'not applicable', 'homo sapiens', '129 Mice', '129-Elite (SOPF) Mouse', 'AKR Mouse', 'Athymic Heterozygous Mouse (Athymic HE)', 'Athymic Nude Mouse', 'B10.A/Cr Mouse', 'B6 Albino Mouse', 'B6C3F1 Mouse', 'B6CBAF1 Mouse', 'B6CBAF1/J (JAX™ Mice Strain)', 'B6D2F1 (BDF1) Mouse', 'B6D2F1/J (JAX™ Mice Strain)', 'BALB/c Heterozygous Mouse (NU+ B/c; NU+ BALB/c)', 'BALB/c Mice', 'BALB/c Nude (JAX™ Mice Strain)', 'BALB/c Nude Mouse', 'BALB/c-Elite Mouse', 'BALB/cByJ (JAX™ Mice Strain)', 'BALB/cByJ SOPF (JAX™ Mice Strain)', 'BDIX Rat', 'Black Swiss Mouse', 'Brown Norway Rat', 'Buffalo Rat', 'C3H Mice', 'C3H SOPF Mouse','C3H/HeOuJ (JAX™ Mice Strain)', 'C57BL/6 Mouse', 'C57BL/6-Aged Mouse', 'C57BL/6-Elite (SOPF) Mouse', 'C57BL/6-Germ-Free Mouse', 'C57BL/6J (JAX™ Mice Strain)', 'C57BL/6J SOPF (JAX™ Mice Strain)', 'CB6F1 Mouse', 'CBA Mouse', 'CBA/J (JAX™ Mice Strain)', 'CBAB6F1 Mouse', 'CD (SD) IGS SOPF Rat', 'CD Hairless Rat', 'CD-1® Heterozygous Mouse (NU+ CD-1®)', 'CD-1® IGS Mouse', 'CD-1® Nude Mouse', 'CD® (Sprague Dawley) IGS Rat', 'CD1-Elite (SOPF) Mouse', 'CD2F1 (CDF1) Mouse', 'CF-1™ Mouse','Copenhagen Rat', 'Dahl/Salt Sensitive Rat', 'DBA/1J (JAX™ Mice Strain)', 'DBA/2 Mouse', 'DBA/2J (JAX™ Mice Strain)', 'FHH Rat', 'Fischer (CDF) Rat', 'Fischer (SAS FISCH) Rat', 'Fox Chase CB17 Mouse', 'Fox Chase SCID Beige Mouse', 'Fox Chase SCID Mouse', 'FVB Mouse', 'Hartley Guinea Pig', 'JAX Mice Metabolic Models', 'K18-hACE2 (JAX™ Mice Strain)', 'Lewis Rat', 'Lister Hooded Rat', 'Long-Evans Rat', 'LVG Golden Syrian Hamster', 'Ly5.1 Mouse', 'Mongolian Gerbil', 'NCI A/JCR Mouse', 'NCI B6-Ly5.1/Cr Mouse', 'NCI SCID/NCr Mouse', 'New Zealand White Rabbit - CR', 'NIH-III Heterozygous Mouse (NIH-III-HE)', 'NIH-III Nude Mouse', 'NMRI Mouse', 'NMRI Nude Mouse', 'NMRI SOPF Mouse','Noble Rat', 'NOD SCID (JAX™ Mice Strain)', 'NOD SCID Mouse', 'NRG Mice (JAX™ Mice Strain)', 'NSG® Mice (JAX™ Mice Strain)', 'NU/NU Heterozygous Mouse (NU+)', 'NU/NU Nude Mouse', 'Obese Prone CD Rat', 'Obese Resistant CD Rat', 'OF1 Mouse', 'OT I Mouse', 'OT II Mouse', 'PCK Rat', 'PGP Mouse (P-glycoprotein Deficient)', 'RNU Heterozygous Rat (RNU+)', 'RNU Nude Rat', 'SAS Sprague Dawley Rat', 'SCID Hairless Congenic (SHC) Mouse', 'SCID Hairless Outbred (SHO®) Mouse', 'Sencar Mouse', 'Sentinel Mouse (Athymic HE)', 'Sentinel Mouse (NU HE)', 'Sentinel Rat (HET RNU)', 'SJL-Elite Mouse', 'SJL/J (JAX™ Mice Strain)', 'SKH1 Hairless Mouse', 'SKH1-Elite Mouse', 'Spontaneously Hypertensive (SHR) Rat', 'Spontaneously Hypertensive Heart Failure (SHHF) Rat (Lean +/?)', 'Spontaneously Hypertensive Heart Failure (SHHF) Rat (Obese cp/cp)', 'Spontaneously Hypertensive Obese (SHROB) Rat', 'Spontaneously Hypertensive Stroke Prone (SHRSP) Rat', 'SS-13BN Rat', 'Swiss Nude Mice', 'Swiss Webster (CFW) Mouse', 'THE POUND MOUSE', 'WAG Rat', 'Wistar Furth Rat', 'Wistar Han IGS Rat', 'Wistar IGS Rat', 'Wistar Kyoto (WKY) Rat', 'Wistar WU Rat', 'ZDF Rat (Lean +/?)', 'ZDF Rat (Lean fa/+)', 'ZDF Rat (Obese fa/fa)', 'ZDSD Rat', 'ZSF1 Rat (Lean)', 'ZSF1 Rat (Obese)', 'Zucker Rat', 'Zucker Rat (Lean)', 'Zucker Rat (Obese)' Type of perturbation, e.g. chemical administration, physical disturbance, etc., coupled with time that perturbation occurred; can include multiple perturbation types free text perturbation List of chemical compounds administered to the host or site where sampling occurred, and when (e.g. antibiotics, N fertilizer, air filter); can include multiple compounds. free text or ontology restricted text from CHEBI, we would need to import all CHEBI terms chemical_administration The geographical origin of the sample as defined by the country or sea. geo_location """Afghanistan"", ""Albania"", ""Algeria"", ""American Samoa"", ""Andorra"", ""Angola"", ""Anguilla"", ""Antarctica"", ""Antigua and Barbuda"", ""Arctic Ocean"", ""Argentina"", ""Armenia"", ""Aruba"", ""Ashmore and Cartier Islands"", ""Atlantic Ocean"", ""Australia"", ""Austria"", ""Azerbaijan"", ""Bahamas"", ""Bahrain"", ""Baker Island"", ""Baltic Sea"", ""Bangladesh"", ""Barbados"", ""Bassas da India"", ""Belarus"", ""Belgium"", ""Belize"", ""Benin"", ""Bermuda"", ""Bhutan"", ""Bolivia"", ""Borneo"", ""Bosnia and Herzegovina"", ""Botswana"", ""Bouvet Island"", ""Brazil"", ""British Virgin Islands"", ""Brunei"", ""Bulgaria"", ""Burkina Faso"", ""Burundi"", ""Cambodia"", ""Cameroon"", ""Canada"", ""Cape Verde"", ""Cayman Islands"", ""Central African Republic"", ""Chad"", ""Chile"", ""China"", ""Christmas Island"", ""Clipperton Island"", ""Cocos Islands"", ""Colombia"", ""Comoros"", ""Cook Islands"", ""Coral Sea Islands"", ""Costa Rica"", ""Cote d'Ivoire"", ""Croatia"", ""Cuba"", ""Curacao"", ""Cyprus"", ""Czech Republic"", ""Democratic Republic of the Congo"", ""Denmark"", ""Djibouti"", ""Dominica"", ""Dominican Republic"", ""East Timor"", ""Ecuador"", ""Egypt"", ""El Salvador"", ""Equatorial Guinea"", ""Eritrea"", ""Estonia"", ""Ethiopia"", ""Europa Island"", ""Falkland Islands (Islas Malvinas)"", ""Faroe Islands"", ""Fiji"", ""Finland"", ""France"", ""French Guiana"", ""French Polynesia"", ""French Southern and Antarctic Lands"", ""Gabon"", ""Gambia"", ""Gaza Strip"", ""Georgia"", ""Germany"", ""Ghana"", ""Gibraltar"", ""Glorioso Islands"", ""Greece"", ""Greenland"", ""Grenada"", ""Guadeloupe"", ""Guam"", ""Guatemala"", ""Guernsey"", ""Guinea"", ""Guinea-Bissau"", ""Guyana"", ""Haiti"", ""Heard Island and McDonald Islands"", ""Honduras"", ""Hong Kong"", ""Howland Island"", ""Hungary"", ""Iceland"", ""India"", ""Indian Ocean"", ""Indonesia"", ""Iran"", ""Iraq"", ""Ireland"", ""Isle of Man"", ""Israel"", ""Italy"", ""Jamaica"", ""Jan Mayen"", ""Japan"", ""Jarvis Island"", ""Jersey"", ""Johnston Atoll"", ""Jordan"", ""Juan de Nova Island"", ""Kazakhstan"", ""Kenya"", ""Kerguelen Archipelago"", ""Kingman Reef"", ""Kiribati"", ""Kosovo"", ""Kuwait"", ""Kyrgyzstan"", ""Laos"", ""Latvia"", ""Lebanon"", ""Lesotho"", ""Liberia"", ""Libya"", ""Liechtenstein"", ""Lithuania"", ""Luxembourg"", ""Macau"", ""Macedonia"", ""Madagascar"", ""Malawi"", ""Malaysia"", ""Maldives"", ""Mali"", ""Malta"", ""Marshall Islands"", ""Martinique"", ""Mauritania"", ""Mauritius"", ""Mayotte"", ""Mediterranean Sea"", ""Mexico"", ""Micronesia"", ""Midway Islands"", ""Moldova"", ""Monaco"", ""Mongolia"", ""Montenegro"", ""Montserrat"", ""Morocco"", ""Mozambique"", ""Myanmar"", ""Namibia"", ""Nauru"", ""Navassa Island"", ""Nepal"", ""Netherlands"", ""New Caledonia"", ""New Zealand"", ""Nicaragua"", ""Niger"", ""Nigeria"", ""Niue"", ""Norfolk Island"", ""North Korea"", ""North Sea"", ""Northern Mariana Islands"", ""Norway"", ""Oman"", ""Pacific Ocean"", ""Pakistan"", ""Palau"", ""Palmyra Atoll"", ""Panama"", ""Papua New Guinea"", ""Paracel Islands"", ""Paraguay"", ""Peru"", ""Philippines"", ""Pitcairn Islands"", ""Poland"", ""Portugal"", ""Puerto Rico"", ""Qatar"", ""Republic of the Congo"", ""Reunion"", ""Romania"", ""Ross Sea"", ""Russia"", ""Rwanda"", ""Saint Helena"", ""Saint Kitts and Nevis"", ""Saint Lucia"", ""Saint Pierre and Miquelon"", ""Saint Vincent and the Grenadines"", ""Samoa"", ""San Marino"", ""Sao Tome and Principe"", ""Saudi Arabia"", ""Senegal"", ""Serbia"", ""Seychelles"", ""Sierra Leone"", ""Singapore"", ""Sint Maarten"", ""Slovakia"", ""Slovenia"", ""Solomon Islands"", ""Somalia"", ""South Africa"", ""South Georgia and the South Sandwich Islands"", ""South Korea"", ""Southern Ocean"", ""Spain"", ""Spratly Islands"", ""Sri Lanka"", ""Sudan"", ""Suriname"", ""Svalbard"", ""Swaziland"", ""Sweden"", ""Switzerland"", ""Syria"", ""Taiwan"", ""Tajikistan"", ""Tanzania"", ""Tasman Sea"", ""Thailand"", ""Togo"", ""Tokelau"", ""Tonga"", ""Trinidad and Tobago"", ""Tromelin Island"", ""Tunisia"", ""Turkey"", ""Turkmenistan"", ""Turks and Caicos Islands"", ""Tuvalu"", ""USA"", ""Uganda"", ""Ukraine"", ""United Arab Emirates"", ""United Kingdom"", ""Uruguay"", ""Uzbekistan"", ""Vanuatu"", ""Venezuela"", ""Viet Nam"", ""Virgin Islands"", ""Wake Island"", ""Wallis and Futuna"", ""West Bank"", ""Western Sahara"", ""Yemen"", ""Zambia"", ""Zimbabwe"", ""not applicable"", ""not collected"", ""not provided"", ""restricted access""" Name of the project within which the sequencing was organized sample_name free text Name of the sample (automatically generated on submission to FNS) project_name free text mandatory_attribute_field ontology_ID This must go together with host total mass. host_total_mass_unit mass unit This must go together with sample storage temperature. sample_storage_temperature_unit temperature unit bioactive compounds polyphenols sulphur compounds phytosterols other compounds contain antioxidant compound group mandatory_attribute non_mandatory_attribute OBI DO DOID sex female female sex hermaphrodite hermaphrodite sex male male sex neuter neuter sex not_applicable sex:not_applicable sex not_collected sex:not_collected sex not_provided sex:not_provided sex other other host_age not_provided host_age:not_provided host_age not_applicable host_age:not_applicable UBERON host_total_mass not_applicable host_total_mass:not_applicable host_bodymass_index:not_provided host_bodymass_index not_applicable host_bodymass_index:not_applicable UO ONS host_total_mass not_provided host_total_mass:not_provided target_subfragment V1 V1 health_status healthy healthy health_status diseased diseased health_status dead dead health_status disease-free disease-free health_status undetermined undetermined health_status recovering recovering health_status resolving resolving health_status pre-existing condition pre-existing condition health_status pathological pathological health_status life threatening life threatening health_status congenital congenital ENVO CHEBI target_subfragment V2 V2 host_body_product not_applicable host_body_product:not_applicable biotic_relationship commensal commensal biotic_relationship host associated host associated biotic_relationship free living free living biotic_relationship mutualism mutualism biotic_relationship parasite parasite biotic_relationship symbiont symbiont NCBITaxon target_subfragment V3 V3 target_subfragment V4 V4 target_subfragment V5 V5 target_subfragment V6 V6 target_subfragment V7 V7 target_subfragment V8 V8 target_subfragment V9 V9 investigation_type bacteria_archaea bacteria_archaea investigation_type eukaryote eukaryote investigation_type metagenome metagenome investigation_type metagenome-assembled_genome metagenome-assembled_genome investigation_type metatranscriptome metatranscriptome investigation_type mimarks-specimen mimarks-specimen investigation_type mimarks-survey mimarks-survey investigation_type organelle organelle investigation_type plasmid plasmid investigation_type single_amplified_enome single_amplified_enome investigation_type uncultivated_viral_genomes uncultivated_viral_genomes investigation_type virus virus target_subfragment ITS1 ITS1 target_subfragment ITS2 ITS2 target_subfragment 5.8S 5.8S target_subfragment none_of_the_above none_of_the_above sequencing_method MinION MinION sequencing_method GridION GridION sequencing_method PromethION PromethION sequencing_method 454 GS 454 GS sequencing_method 454 GS 20 454 GS 20 sequencing_method 454 GS FLX 454 GS FLX sequencing_method 454 GS FLX+ 454 GS FLX+ sequencing_method 454 GS FLX Titanium 454 GS FLX Titanium sequencing_method 454 GS Junior 454 GS Junior sequencing_method Illumina Genome Analyzer Illumina Genome Analyzer sequencing_method Illumina Genome Analyzer II Illumina Genome Analyzer II sequencing_method Illumina Genome Analyzer IIx Illumina Genome Analyzer IIx sequencing_method Illumina HiSeq 4000 Illumina HiSeq 4000 sequencing_method Illumina HiSeq 3000 Illumina HiSeq 3000 sequencing_method Illumina HiSeq 2500 Illumina HiSeq 2500 sequencing_method Illumina HiSeq 2000 Illumina HiSeq 2000 sequencing_method Illumina HiSeq 1500 Illumina HiSeq 1500 sequencing_method Illumina HiSeq 1000 Illumina HiSeq 1000 sequencing_method Illumina HiScanSQ Illumina HiScanSQ sequencing_method Illumina MiSeq Illumina MiSeq sequencing_method Illumina HiSeq X Five Illumina HiSeq X Five sequencing_method Illumina HiSeq X Ten Illumina HiSeq X Ten sequencing_method Illumina NextSeq 500 Illumina NextSeq 500 sequencing_method Illumina NextSeq 550 Illumina NextSeq 550 sequencing_method AB SOLiD System AB SOLiD System sequencing_method AB SOLiD System 2.0 AB SOLiD System 2.0 sequencing_method AB SOLiD System 3.0 AB SOLiD System 3.0 sequencing_method AB SOLiD 3 Plus System AB SOLiD 3 Plus System sequencing_method AB SOLiD 4 System AB SOLiD 4 System sequencing_method AB SOLiD 4hq System AB SOLiD 4hq System sequencing_method AB SOLiD PI System AB SOLiD PI System sequencing_method AB 5500 Genetic Analyzer AB 5500 Genetic Analyzer sequencing_method AB 5500xl Genetic Analyzer AB 5500xl Genetic Analyzer sequencing_method AB 5500xl-W Genetic Analysis System AB 5500xl-W Genetic Analysis System sequencing_method Ion Torrent PGM Ion Torrent PGM sequencing_method Ion Torrent Proton Ion Torrent Proton sequencing_method Ion Torrent S5 Ion Torrent S5 sequencing_method Ion Torrent S5 XL Ion Torrent S5 XL sequencing_method PacBio RS PacBio RS sequencing_method PacBio RS II PacBio RS II sequencing_method Sequel Sequel sequencing_method AB 3730xL Genetic Analyzer AB 3730xL Genetic Analyzer sequencing_method AB 3730 Genetic Analyzer AB 3730 Genetic Analyzer sequencing_method AB 3500xL Genetic Analyzer AB 3500xL Genetic Analyzer sequencing_method AB 3500 Genetic Analyzer AB 3500 Genetic Analyzer sequencing_method AB 3130xL Genetic Analyzer AB 3130xL Genetic Analyzer sequencing_method AB 3130 Genetic Analyzer AB 3130 Genetic Analyzer sequencing_method AB 310 Genetic Analyzer AB 310 Genetic Analyzer sequencing_method BGISEQ-500 BGISEQ-500 geo_location Afghanistan Afghanistan geo_location Albania Albania geo_location Algeria Algeria geo_location American Samoa American Samoa geo_location Andorra Andorra geo_location Angola Angola geo_location Anguilla Anguilla geo_location Antarctica Antarctica geo_location Antigua and Barbuda Antigua and Barbuda geo_location Arctic Ocean Arctic Ocean geo_location Argentina Argentina geo_location Armenia Armenia geo_location Aruba Aruba geo_location Ashmore and Cartier Islands Ashmore and Cartier Islands geo_location Atlantic Ocean Atlantic Ocean geo_location Australia Australia geo_location Austria Austria geo_location Azerbaijan Azerbaijan geo_location Bahamas Bahamas geo_location Bahrain Bahrain geo_location Baker Island Baker Island geo_location Baltic Sea Baltic Sea geo_location Bangladesh Bangladesh geo_location Barbados Barbados geo_location Bassas da India Bassas da India geo_location Belarus Belarus geo_location Belgium Belgium geo_location Belize Belize geo_location Benin Benin geo_location Bermuda Bermuda geo_location Bhutan Bhutan geo_location Bolivia Bolivia geo_location Borneo Borneo geo_location Bosnia and Herzegovina Bosnia and Herzegovina geo_location Botswana Botswana geo_location Bouvet Island Bouvet Island geo_location Brazil Brazil geo_location British Virgin Islands British Virgin Islands geo_location Brunei Brunei geo_location Bulgaria Bulgaria geo_location Burkina Faso Burkina Faso geo_location Burundi Burundi geo_location Cambodia Cambodia geo_location Cameroon Cameroon geo_location Canada Canada geo_location Cape Verde Cape Verde geo_location Cayman Islands Cayman Islands geo_location Central African Republic Central African Republic geo_location Chad Chad geo_location Chile Chile geo_location China China geo_location Christmas Island Christmas Island geo_location Clipperton Island Clipperton Island geo_location Cocos Islands Cocos Islands geo_location Colombia Colombia geo_location Comoros Comoros geo_location Cook Islands Cook Islands geo_location Coral Sea Islands Coral Sea Islands geo_location Costa Rica Costa Rica geo_location Cote d'Ivoire Cote d'Ivoire geo_location Croatia Croatia geo_location Cuba Cuba geo_location Curacao Curacao geo_location Cyprus Cyprus geo_location Czech Republic Czech Republic geo_location Democratic Republic of the Congo Democratic Republic of the Congo geo_location Denmark Denmark geo_location Djibouti Djibouti geo_location Dominica Dominica geo_location Dominican Republic Dominican Republic geo_location East Timor East Timor geo_location Ecuador Ecuador geo_location Egypt Egypt geo_location El Salvador El Salvador geo_location Equatorial Guinea Equatorial Guinea geo_location Eritrea Eritrea geo_location Estonia Estonia geo_location Ethiopia Ethiopia geo_location Europa Island Europa Island geo_location Falkland Islands (Islas Malvinas) Falkland Islands (Islas Malvinas) geo_location Faroe Islands Faroe Islands geo_location Fiji Fiji geo_location Finland Finland geo_location France France geo_location French Guiana French Guiana geo_location French Polynesia French Polynesia geo_location French Southern and Antarctic Lands French Southern and Antarctic Lands geo_location Gabon Gabon geo_location Gambia Gambia geo_location Gaza Strip Gaza Strip geo_location Georgia Georgia geo_location Germany Germany geo_location Ghana Ghana geo_location Gibraltar Gibraltar geo_location Glorioso Islands Glorioso Islands geo_location Greece Greece geo_location Greenland Greenland geo_location Grenada Grenada geo_location Guadeloupe Guadeloupe geo_location Guam Guam geo_location Guatemala Guatemala geo_location Guernsey Guernsey geo_location Guinea Guinea geo_location Guinea-Bissau Guinea-Bissau geo_location Guyana Guyana geo_location Haiti Haiti geo_location Heard Island and McDonald Islands Heard Island and McDonald Islands geo_location Honduras Honduras geo_location Hong Kong Hong Kong geo_location Howland Island Howland Island geo_location Hungary Hungary geo_location Iceland Iceland geo_location India India geo_location Indian Ocean Indian Ocean geo_location Indonesia Indonesia geo_location Iran Iran geo_location Iraq Iraq geo_location Ireland Ireland geo_location Isle of Man Isle of Man geo_location Israel Israel geo_location Italy Italy geo_location Jamaica Jamaica geo_location Jan Mayen Jan Mayen geo_location Japan Japan geo_location Jarvis Island Jarvis Island geo_location Jersey Jersey geo_location Johnston Atoll Johnston Atoll geo_location Jordan Jordan geo_location Juan de Nova Island Juan de Nova Island geo_location Kazakhstan Kazakhstan geo_location Kenya Kenya geo_location Kerguelen Archipelago Kerguelen Archipelago geo_location Kingman Reef Kingman Reef geo_location Kiribati Kiribati geo_location Kosovo Kosovo geo_location Kuwait Kuwait geo_location Kyrgyzstan Kyrgyzstan geo_location Laos Laos geo_location Latvia Latvia geo_location Lebanon Lebanon geo_location Lesotho Lesotho geo_location Liberia Liberia geo_location Libya Libya geo_location Liechtenstein Liechtenstein geo_location Lithuania Lithuania geo_location Luxembourg Luxembourg geo_location Macau Macau geo_location Macedonia Macedonia geo_location Madagascar Madagascar geo_location Malawi Malawi geo_location Malaysia Malaysia geo_location Maldives Maldives geo_location Mali Mali geo_location Malta Malta geo_location Marshall Islands Marshall Islands geo_location Martinique Martinique geo_location Mauritania Mauritania geo_location Mauritius Mauritius geo_location Mayotte Mayotte geo_location Mediterranean Sea Mediterranean Sea geo_location Mexico Mexico geo_location Micronesia Micronesia geo_location Midway Islands Midway Islands geo_location Moldova Moldova geo_location Monaco Monaco geo_location Mongolia Mongolia geo_location Montenegro Montenegro geo_location Montserrat Montserrat geo_location Morocco Morocco geo_location Mozambique Mozambique geo_location Myanmar Myanmar geo_location Namibia Namibia geo_location Nauru Nauru geo_location Navassa Island Navassa Island geo_location Nepal Nepal geo_location Netherlands Netherlands geo_location New Caledonia New Caledonia geo_location New Zealand New Zealand geo_location Nicaragua Nicaragua geo_location Niger Niger geo_location Nigeria Nigeria geo_location Niue Niue geo_location Norfolk Island Norfolk Island geo_location North Korea North Korea geo_location North Sea North Sea geo_location Northern Mariana Islands Northern Mariana Islands geo_location Norway Norway geo_location Oman Oman geo_location Pacific Ocean Pacific Ocean geo_location Pakistan Pakistan geo_location Palau Palau geo_location Palmyra Atoll Palmyra Atoll geo_location Panama Panama geo_location Papua New Guinea Papua New Guinea geo_location Paracel Islands Paracel Islands geo_location Paraguay Paraguay geo_location Peru Peru geo_location Philippines Philippines geo_location Pitcairn Islands Pitcairn Islands geo_location Poland Poland geo_location Portugal Portugal geo_location Puerto Rico Puerto Rico geo_location Qatar Qatar geo_location Republic of the Congo Republic of the Congo geo_location Reunion Reunion geo_location Romania Romania geo_location Ross Sea Ross Sea geo_location Russia Russia geo_location Rwanda Rwanda geo_location Saint Helena Saint Helena geo_location Saint Kitts and Nevis Saint Kitts and Nevis geo_location Saint Lucia Saint Lucia geo_location Saint Pierre and Miquelon Saint Pierre and Miquelon geo_location Saint Vincent and the Grenadines Saint Vincent and the Grenadines geo_location Samoa Samoa geo_location San Marino San Marino geo_location Sao Tome and Principe Sao Tome and Principe geo_location Saudi Arabia Saudi Arabia geo_location Senegal Senegal geo_location Serbia Serbia geo_location Seychelles Seychelles geo_location Sierra Leone Sierra Leone geo_location Singapore Singapore geo_location Sint Maarten Sint Maarten geo_location Slovakia Slovakia geo_location Slovenia Slovenia geo_location Solomon Islands Solomon Islands geo_location Somalia Somalia geo_location South Africa South Africa geo_location South Georgia and the South Sandwich Islands South Georgia and the South Sandwich Islands geo_location South Korea South Korea geo_location Southern Ocean Southern Ocean geo_location Spain Spain geo_location Spratly Islands Spratly Islands geo_location Sri Lanka Sri Lanka geo_location Sudan Sudan geo_location Suriname Suriname geo_location Svalbard Svalbard geo_location Swaziland Swaziland geo_location Sweden Sweden geo_location Switzerland Switzerland geo_location Syria Syria geo_location Taiwan Taiwan geo_location Tajikistan Tajikistan geo_location Tanzania Tanzania geo_location Tasman Sea Tasman Sea geo_location Thailand Thailand geo_location Togo Togo geo_location Tokelau Tokelau geo_location Tonga Tonga geo_location Trinidad and Tobago Trinidad and Tobago geo_location Tromelin Island Tromelin Island geo_location Tunisia Tunisia geo_location Turkey Turkey geo_location Turkmenistan Turkmenistan geo_location Turks and Caicos Islands Turks and Caicos Islands geo_location Tuvalu Tuvalu geo_location USA USA geo_location Uganda Uganda geo_location Ukraine Ukraine geo_location United Arab Emirates United Arab Emirates geo_location United Kingdom United Kingdom geo_location Uruguay Uruguay geo_location Uzbekistan Uzbekistan geo_location Vanuatu Vanuatu geo_location Venezuela Venezuela geo_location Viet Nam Viet Nam geo_location Virgin Islands Virgin Islands geo_location Wake Island Wake Island geo_location Wallis and Futuna Wallis and Futuna geo_location West Bank West Bank geo_location Western Sahara Western Sahara geo_location Yemen Yemen geo_location Zambia Zambia geo_location Zimbabwe Zimbabwe geo_location not applicable not applicable geo_location not collected not collected geo_location not provided not provided geo_location restricted access restricted access sample_collection_device tube device tube device sample_collection_device syringe syringe sample_collection_device core core sample_collection_device spatula spatula sample_collection_device portion of sample portion of sample sample_collection_device biopsy biopsy sample_collection_device other device other device target_gene 16S rRNA 16S rRNA target_gene ITS ITS target_gene Whole genome Whole genome target_gene 18S rRNA 18S rRNA target_gene target gene not provided target gene not provided target_gene other target gene other target gene host_genotype wildtype wildtype host_genotype host genotype not provided host genotype not provided host_genotype host genotype not applicable host genotype not applicable host_genotype homo sapiens homo sapiens host_genotype 129 Mice 129 Mice host_genotype 129-Elite (SOPF) Mouse 129-Elite (SOPF) Mouse host_genotype AKR Mouse AKR Mouse host_genotype Athymic Heterozygous Mouse (Athymic HE) Athymic Heterozygous Mouse (Athymic HE) host_genotype Athymic Nude Mouse Athymic Nude Mouse host_genotype B10.A/Cr Mouse B10.A/Cr Mouse host_genotype B6 Albino Mouse B6 Albino Mouse host_genotype B6C3F1 Mouse B6C3F1 Mouse host_genotype B6CBAF1 Mouse B6CBAF1 Mouse host_genotype B6CBAF1/J (JAX™ Mice Strain) B6CBAF1/J (JAX™ Mice Strain) host_genotype B6D2F1 (BDF1) Mouse B6D2F1 (BDF1) Mouse host_genotype B6D2F1/J (JAX™ Mice Strain) B6D2F1/J (JAX™ Mice Strain) host_genotype BALB/c Heterozygous Mouse (NU+ B/c; NU+ BALB/c) BALB/c Heterozygous Mouse (NU+ B/c; NU+ BALB/c) host_genotype BALB/c Mice BALB/c Mice host_genotype BALB/c Nude (JAX™ Mice Strain) BALB/c Nude (JAX™ Mice Strain) host_genotype BALB/c Nude Mouse BALB/c Nude Mouse host_genotype BALB/c-Elite Mouse BALB/c-Elite Mouse host_genotype BALB/cByJ (JAX™ Mice Strain) BALB/cByJ (JAX™ Mice Strain) host_genotype BALB/cByJ SOPF (JAX™ Mice Strain) BALB/cByJ SOPF (JAX™ Mice Strain) host_genotype BDIX Rat BDIX Rat host_genotype Black Swiss Mouse Black Swiss Mouse host_genotype Brown Norway Rat Brown Norway Rat host_genotype Buffalo Rat Buffalo Rat host_genotype C3H Mice C3H Mice host_genotype C3H SOPF Mouse C3H SOPF Mouse host_genotype C3H/HeOuJ (JAX™ Mice Strain) C3H/HeOuJ (JAX™ Mice Strain) host_genotype C57BL/6 Mouse C57BL/6 Mouse host_genotype C57BL/6-Aged Mouse C57BL/6-Aged Mouse host_genotype C57BL/6-Elite (SOPF) Mouse C57BL/6-Elite (SOPF) Mouse host_genotype C57BL/6-Germ-Free Mouse C57BL/6-Germ-Free Mouse host_genotype C57BL/6J (JAX™ Mice Strain) C57BL/6J (JAX™ Mice Strain) host_genotype C57BL/6J SOPF (JAX™ Mice Strain) C57BL/6J SOPF (JAX™ Mice Strain) host_genotype CB6F1 Mouse CB6F1 Mouse host_genotype CBA Mouse CBA Mouse host_genotype CBA/J (JAX™ Mice Strain) CBA/J (JAX™ Mice Strain) host_genotype CBAB6F1 Mouse CBAB6F1 Mouse host_genotype CD (SD) IGS SOPF Rat CD (SD) IGS SOPF Rat host_genotype CD Hairless Rat CD Hairless Rat host_genotype CD-1® Heterozygous Mouse (NU+ CD-1®) CD-1® Heterozygous Mouse (NU+ CD-1®) host_genotype CD-1® IGS Mouse CD-1® IGS Mouse host_genotype CD-1® Nude Mouse CD-1® Nude Mouse host_genotype CD® (Sprague Dawley) IGS Rat CD® (Sprague Dawley) IGS Rat host_genotype CD1-Elite (SOPF) Mouse CD1-Elite (SOPF) Mouse host_genotype CD2F1 (CDF1) Mouse CD2F1 (CDF1) Mouse host_genotype CF-1™ Mouse CF-1™ Mouse host_genotype Copenhagen Rat Copenhagen Rat host_genotype Dahl/Salt Sensitive Rat Dahl/Salt Sensitive Rat host_genotype DBA/1J (JAX™ Mice Strain) DBA/1J (JAX™ Mice Strain) host_genotype DBA/2 Mouse DBA/2 Mouse host_genotype DBA/2J (JAX™ Mice Strain) DBA/2J (JAX™ Mice Strain) host_genotype FHH Rat FHH Rat host_genotype Fischer (CDF) Rat Fischer (CDF) Rat host_genotype Fischer (SAS FISCH) Rat Fischer (SAS FISCH) Rat host_genotype Fox Chase CB17 Mouse Fox Chase CB17 Mouse host_genotype Fox Chase SCID Beige Mouse Fox Chase SCID Beige Mouse host_genotype Fox Chase SCID Mouse Fox Chase SCID Mouse host_genotype FVB Mouse FVB Mouse host_genotype Hartley Guinea Pig Hartley Guinea Pig host_genotype JAX Mice Metabolic Models JAX Mice Metabolic Models host_genotype K18-hACE2 (JAX™ Mice Strain) K18-hACE2 (JAX™ Mice Strain) host_genotype Lewis Rat Lewis Rat host_genotype Lister Hooded Rat Lister Hooded Rat host_genotype Long-Evans Rat Long-Evans Rat host_genotype LVG Golden Syrian Hamster LVG Golden Syrian Hamster host_genotype Ly5.1 Mouse Ly5.1 Mouse host_genotype Mongolian Gerbil Mongolian Gerbil host_genotype NCI A/JCR Mouse NCI A/JCR Mouse host_genotype NCI B6-Ly5.1/Cr Mouse NCI B6-Ly5.1/Cr Mouse host_genotype NCI SCID/NCr Mouse NCI SCID/NCr Mouse host_genotype New Zealand White Rabbit - CR New Zealand White Rabbit - CR host_genotype NIH-III Heterozygous Mouse (NIH-III-HE) NIH-III Heterozygous Mouse (NIH-III-HE) host_genotype NIH-III Nude Mouse NIH-III Nude Mouse host_genotype NMRI Mouse NMRI Mouse host_genotype NMRI Nude Mouse NMRI Nude Mouse host_genotype NMRI SOPF Mouse NMRI SOPF Mouse host_genotype Noble Rat Noble Rat host_genotype NOD SCID (JAX™ Mice Strain) NOD SCID (JAX™ Mice Strain) host_genotype NOD SCID Mouse NOD SCID Mouse host_genotype NRG Mice (JAX™ Mice Strain) NRG Mice (JAX™ Mice Strain) host_genotype NSG® Mice (JAX™ Mice Strain) NSG® Mice (JAX™ Mice Strain) host_genotype NU/NU Heterozygous Mouse (NU+) NU/NU Heterozygous Mouse (NU+) host_genotype NU/NU Nude Mouse NU/NU Nude Mouse host_genotype Obese Prone CD Rat Obese Prone CD Rat host_genotype Obese Resistant CD Rat Obese Resistant CD Rat host_genotype OF1 Mouse OF1 Mouse host_genotype OT I Mouse OT I Mouse host_genotype OT II Mouse OT II Mouse host_genotype PCK Rat PCK Rat host_genotype PGP Mouse (P-glycoprotein Deficient) PGP Mouse (P-glycoprotein Deficient) host_genotype RNU Heterozygous Rat (RNU+) RNU Heterozygous Rat (RNU+) host_genotype RNU Nude Rat RNU Nude Rat host_genotype SAS Sprague Dawley Rat SAS Sprague Dawley Rat host_genotype SCID Hairless Congenic (SHC) Mouse SCID Hairless Congenic (SHC) Mouse host_genotype SCID Hairless Outbred (SHO®) Mouse SCID Hairless Outbred (SHO®) Mouse host_genotype Sencar Mouse Sencar Mouse host_genotype Sentinel Mouse (Athymic HE) Sentinel Mouse (Athymic HE) host_genotype Sentinel Mouse (NU HE) Sentinel Mouse (NU HE) host_genotype Sentinel Rat (HET RNU) Sentinel Rat (HET RNU) host_genotype SJL-Elite Mouse SJL-Elite Mouse host_genotype SJL/J (JAX™ Mice Strain) SJL/J (JAX™ Mice Strain) host_genotype SKH1 Hairless Mouse SKH1 Hairless Mouse host_genotype SKH1-Elite Mouse SKH1-Elite Mouse host_genotype Spontaneously Hypertensive (SHR) Rat Spontaneously Hypertensive (SHR) Rat host_genotype Spontaneously Hypertensive Heart Failure (SHHF) Rat (Lean +/?) Spontaneously Hypertensive Heart Failure (SHHF) Rat (Lean +/?) host_genotype Spontaneously Hypertensive Heart Failure (SHHF) Rat (Obese cp/cp) Spontaneously Hypertensive Heart Failure (SHHF) Rat (Obese cp/cp) host_genotype Spontaneously Hypertensive Obese (SHROB) Rat Spontaneously Hypertensive Obese (SHROB) Rat host_genotype Spontaneously Hypertensive Stroke Prone (SHRSP) Rat Spontaneously Hypertensive Stroke Prone (SHRSP) Rat host_genotype SS-13BN Rat SS-13BN Rat host_genotype Swiss Nude Mice Swiss Nude Mice host_genotype Swiss Webster (CFW) Mouse Swiss Webster (CFW) Mouse host_genotype THE POUND MOUSE THE POUND MOUSE host_genotype WAG Rat WAG Rat host_genotype Wistar Furth Rat Wistar Furth Rat host_genotype Wistar Han IGS Rat Wistar Han IGS Rat host_genotype Wistar IGS Rat Wistar IGS Rat host_genotype Wistar Kyoto (WKY) Rat Wistar Kyoto (WKY) Rat host_genotype Wistar WU Rat Wistar WU Rat host_genotype ZDF Rat (Lean +/?) ZDF Rat (Lean +/?) host_genotype ZDF Rat (Lean fa/+) ZDF Rat (Lean fa/+) host_genotype ZDF Rat (Obese fa/fa) ZDF Rat (Obese fa/fa) host_genotype ZDSD Rat ZDSD Rat host_genotype ZSF1 Rat (Lean) ZSF1 Rat (Lean) host_genotype ZSF1 Rat (Obese) ZSF1 Rat (Obese) host_genotype Zucker Rat Zucker Rat host_genotype Zucker Rat (Lean) Zucker Rat (Lean) host_genotype Zucker Rat (Obese) Zucker Rat (Obese) Pance Panov (JSI) has-study-type maps-to-ISA-term STUDY_TYPE